Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1708

Experiment: Dictyostellum sp.mixed culture-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1706 and GFF1707 are separated by 24 nucleotidesGFF1707 and GFF1708 are separated by 5 nucleotidesGFF1708 and GFF1709 are separated by 7 nucleotidesGFF1709 and GFF1710 are separated by 196 nucleotides GFF1706 - Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1), at 4,362 to 5,252 GFF1706 GFF1707 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 5,277 to 6,242 GFF1707 GFF1708 - Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1), at 6,248 to 7,753 GFF1708 GFF1709 - Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1), at 7,761 to 8,180 GFF1709 GFF1710 - Kup system potassium uptake protein, at 8,377 to 10,245 GFF1710 Position (kb) 6 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1at 5.471 kb on + strand, within GFF1707at 5.471 kb on + strand, within GFF1707at 5.485 kb on + strand, within GFF1707at 5.573 kb on - strand, within GFF1707at 5.579 kb on + strand, within GFF1707at 5.600 kb on + strand, within GFF1707at 5.648 kb on + strand, within GFF1707at 5.651 kb on - strand, within GFF1707at 5.678 kb on + strand, within GFF1707at 5.678 kb on + strand, within GFF1707at 5.679 kb on - strand, within GFF1707at 5.679 kb on - strand, within GFF1707at 5.680 kb on + strand, within GFF1707at 5.723 kb on + strand, within GFF1707at 5.813 kb on - strand, within GFF1707at 5.836 kb on - strand, within GFF1707at 6.381 kb on - strandat 6.443 kb on - strand, within GFF1708at 6.556 kb on + strand, within GFF1708at 6.704 kb on - strand, within GFF1708at 6.704 kb on - strand, within GFF1708at 6.704 kb on - strand, within GFF1708at 6.713 kb on - strand, within GFF1708at 6.746 kb on - strand, within GFF1708at 6.762 kb on + strand, within GFF1708at 6.763 kb on - strand, within GFF1708at 6.831 kb on + strand, within GFF1708at 6.831 kb on + strand, within GFF1708at 7.033 kb on + strand, within GFF1708at 7.154 kb on - strand, within GFF1708at 7.166 kb on - strand, within GFF1708at 7.167 kb on + strand, within GFF1708at 7.167 kb on + strand, within GFF1708at 7.168 kb on - strand, within GFF1708at 7.168 kb on - strand, within GFF1708at 7.168 kb on - strand, within GFF1708at 7.168 kb on - strand, within GFF1708at 7.168 kb on - strand, within GFF1708at 7.505 kb on - strand, within GFF1708at 7.593 kb on + strand, within GFF1708at 7.593 kb on + strand, within GFF1708at 7.594 kb on - strand, within GFF1708at 7.605 kb on - strandat 7.720 kb on + strandat 8.027 kb on + strand, within GFF1709at 8.028 kb on - strand, within GFF1709at 8.115 kb on - strand, within GFF1709at 8.121 kb on - strand, within GFF1709at 8.163 kb on + strandat 8.163 kb on + strandat 8.222 kb on - strandat 8.240 kb on - strandat 8.307 kb on + strandat 8.322 kb on + strandat 8.394 kb on + strandat 8.399 kb on - strandat 8.496 kb on - strandat 8.535 kb on + strandat 8.565 kb on + strand, within GFF1710at 8.565 kb on + strand, within GFF1710at 8.566 kb on - strand, within GFF1710at 8.566 kb on - strand, within GFF1710at 8.689 kb on - strand, within GFF1710at 8.696 kb on + strand, within GFF1710at 8.696 kb on + strand, within GFF1710

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
remove
5,471 + GFF1707 0.20 +0.1
5,471 + GFF1707 0.20 +1.0
5,485 + GFF1707 0.22 +0.3
5,573 - GFF1707 0.31 -0.2
5,579 + GFF1707 0.31 +1.0
5,600 + GFF1707 0.33 -0.3
5,648 + GFF1707 0.38 -0.4
5,651 - GFF1707 0.39 -0.6
5,678 + GFF1707 0.42 +0.4
5,678 + GFF1707 0.42 -0.1
5,679 - GFF1707 0.42 +0.1
5,679 - GFF1707 0.42 +0.2
5,680 + GFF1707 0.42 +0.2
5,723 + GFF1707 0.46 +0.1
5,813 - GFF1707 0.55 +0.0
5,836 - GFF1707 0.58 -0.2
6,381 - +0.2
6,443 - GFF1708 0.13 +0.1
6,556 + GFF1708 0.20 -0.1
6,704 - GFF1708 0.30 +0.3
6,704 - GFF1708 0.30 -0.4
6,704 - GFF1708 0.30 +0.2
6,713 - GFF1708 0.31 -0.8
6,746 - GFF1708 0.33 +0.2
6,762 + GFF1708 0.34 -0.1
6,763 - GFF1708 0.34 +0.1
6,831 + GFF1708 0.39 -0.1
6,831 + GFF1708 0.39 +0.6
7,033 + GFF1708 0.52 +0.6
7,154 - GFF1708 0.60 +0.1
7,166 - GFF1708 0.61 +0.0
7,167 + GFF1708 0.61 +0.8
7,167 + GFF1708 0.61 -0.2
7,168 - GFF1708 0.61 -0.6
7,168 - GFF1708 0.61 -0.4
7,168 - GFF1708 0.61 -0.5
7,168 - GFF1708 0.61 -0.8
7,168 - GFF1708 0.61 -0.1
7,505 - GFF1708 0.83 -0.0
7,593 + GFF1708 0.89 +0.0
7,593 + GFF1708 0.89 -0.0
7,594 - GFF1708 0.89 +0.1
7,605 - +0.1
7,720 + -0.4
8,027 + GFF1709 0.63 -3.1
8,028 - GFF1709 0.64 +0.4
8,115 - GFF1709 0.84 -0.3
8,121 - GFF1709 0.86 -0.1
8,163 + -0.2
8,163 + +0.9
8,222 - +0.3
8,240 - -2.0
8,307 + +0.1
8,322 + -0.5
8,394 + +1.1
8,399 - -0.2
8,496 - -0.8
8,535 + -0.3
8,565 + GFF1710 0.10 +0.4
8,565 + GFF1710 0.10 -0.2
8,566 - GFF1710 0.10 -0.1
8,566 - GFF1710 0.10 -0.7
8,689 - GFF1710 0.17 +0.1
8,696 + GFF1710 0.17 +0.7
8,696 + GFF1710 0.17 +0.1

Or see this region's nucleotide sequence