Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1452

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
112,873	+		GFF1450	0.75	+0.4
112,874	-		GFF1450	0.75	-0.7
112,895	+		GFF1450	0.76	+0.2
112,897	+		GFF1450	0.76	+0.1
112,972	+		GFF1450	0.81	+0.5
112,998	-		GFF1450	0.82	-0.6
113,039	+		GFF1450	0.85	+0.1
113,040	-		GFF1450	0.85	+0.6
113,041	+		GFF1450	0.85	-0.2
113,041	+		GFF1450	0.85	+0.0
113,042	-		GFF1450	0.85	+0.2
113,082	-		GFF1450	0.87	+0.1
113,099	-		GFF1450	0.88	+0.0
113,099	-		GFF1450	0.88	+0.2
113,355	+		GFF1451	0.22	-0.6
113,355	+		GFF1451	0.22	+0.2
113,491	-		GFF1451	0.65	-1.0
113,574	-				-0.0
113,677	-				-0.0
113,690	+				+0.3
113,840	+				+0.0
113,840	+				-1.7
113,840	+				+0.2
113,841	-				+0.2
113,973	+				-0.4
114,051	+		GFF1452	0.11	-0.0
114,051	+		GFF1452	0.11	+0.2
114,052	-		GFF1452	0.11	-0.2
114,056	-		GFF1452	0.11	+0.2
114,119	+		GFF1452	0.14	-0.3
114,119	+		GFF1452	0.14	-0.5
114,157	-		GFF1452	0.16	+0.3
114,245	-		GFF1452	0.20	+0.2
114,317	+		GFF1452	0.24	-0.1
114,322	-		GFF1452	0.24	-0.3
114,328	-		GFF1452	0.25	-0.2
114,334	-		GFF1452	0.25	-0.7
114,541	-		GFF1452	0.36	+0.8
114,738	+		GFF1452	0.46	-0.0
114,740	+		GFF1452	0.46	+0.9
114,820	+		GFF1452	0.50	+0.2
114,851	+		GFF1452	0.51	+0.1
114,851	+		GFF1452	0.51	+0.5
114,860	+		GFF1452	0.52	-0.5
114,903	-		GFF1452	0.54	-0.2
114,932	+		GFF1452	0.55	+0.3
114,932	+		GFF1452	0.55	+0.7
114,936	+		GFF1452	0.56	+0.1
114,937	-		GFF1452	0.56	-0.3
115,017	-		GFF1452	0.60	-0.2
115,017	-		GFF1452	0.60	+0.0
115,235	-		GFF1452	0.71	+0.5
115,235	-		GFF1452	0.71	+0.3
115,392	-		GFF1452	0.79	+0.2
115,417	-		GFF1452	0.80	+1.5
115,482	+		GFF1452	0.84	+0.3
115,483	-		GFF1452	0.84	+0.8
115,483	-		GFF1452	0.84	+1.2
115,483	-		GFF1452	0.84	+0.3
115,519	-		GFF1452	0.85	+0.1
115,603	-		GFF1452	0.90	+0.1
115,733	+				+0.1
115,865	-				-0.0
115,922	-				+0.0
116,087	+				+0.2
116,134	+				-0.3
116,159	-				+0.3
116,209	-				-0.0
116,276	+				+0.1
116,279	-				+0.3