Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1338 and GFF1339 overlap by 4 nucleotides GFF1339 and GFF1340 are separated by 40 nucleotides
GFF1338 - Putative outer membrane protein, at 45,462 to 46,538
GFF1338
GFF1339 - Probable fimbrial chaperone protein, at 46,535 to 47,278
GFF1339
GFF1340 - FIG036507: Fimbriae usher protein StdB, at 47,319 to 49,808
GFF1340
Position (kb) 46
47
48 Strain fitness (log2 ratio) -1
0
1 at 45.851 kb on - strand, within GFF1338 at 45.851 kb on - strand, within GFF1338 at 45.863 kb on + strand, within GFF1338 at 46.439 kb on + strand at 46.439 kb on + strand at 46.443 kb on + strand at 46.443 kb on + strand at 46.621 kb on + strand, within GFF1339 at 46.621 kb on + strand, within GFF1339 at 46.622 kb on - strand, within GFF1339 at 46.622 kb on - strand, within GFF1339 at 46.623 kb on + strand, within GFF1339 at 46.668 kb on - strand, within GFF1339 at 46.668 kb on - strand, within GFF1339 at 46.730 kb on - strand, within GFF1339 at 46.761 kb on + strand, within GFF1339 at 46.764 kb on + strand, within GFF1339 at 46.850 kb on - strand, within GFF1339 at 46.867 kb on - strand, within GFF1339 at 46.867 kb on - strand, within GFF1339 at 46.981 kb on + strand, within GFF1339 at 46.981 kb on + strand, within GFF1339 at 46.981 kb on + strand, within GFF1339 at 46.982 kb on - strand, within GFF1339 at 46.982 kb on - strand, within GFF1339 at 47.038 kb on + strand, within GFF1339 at 47.179 kb on + strand, within GFF1339 at 47.180 kb on - strand, within GFF1339 at 47.314 kb on + strand at 47.321 kb on - strand at 47.681 kb on + strand, within GFF1340 at 47.681 kb on + strand, within GFF1340 at 47.787 kb on + strand, within GFF1340 at 47.787 kb on + strand, within GFF1340 at 47.788 kb on - strand, within GFF1340 at 47.788 kb on - strand, within GFF1340 at 47.788 kb on - strand, within GFF1340 at 48.088 kb on + strand, within GFF1340 at 48.088 kb on + strand, within GFF1340 at 48.089 kb on - strand, within GFF1340 at 48.089 kb on - strand, within GFF1340 at 48.120 kb on - strand, within GFF1340 at 48.163 kb on + strand, within GFF1340 at 48.244 kb on + strand, within GFF1340 at 48.245 kb on - strand, within GFF1340 at 48.245 kb on - strand, within GFF1340 at 48.245 kb on - strand, within GFF1340 at 48.248 kb on + strand, within GFF1340
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 45,851 - GFF1338 0.36 +0.3 45,851 - GFF1338 0.36 +0.2 45,863 + GFF1338 0.37 -0.3 46,439 + +0.2 46,439 + -0.1 46,443 + -0.5 46,443 + +0.0 46,621 + GFF1339 0.12 +0.2 46,621 + GFF1339 0.12 +0.3 46,622 - GFF1339 0.12 +0.3 46,622 - GFF1339 0.12 +1.3 46,623 + GFF1339 0.12 -0.3 46,668 - GFF1339 0.18 -0.2 46,668 - GFF1339 0.18 +0.2 46,730 - GFF1339 0.26 -0.8 46,761 + GFF1339 0.30 -0.2 46,764 + GFF1339 0.31 -0.1 46,850 - GFF1339 0.42 -0.9 46,867 - GFF1339 0.45 +0.0 46,867 - GFF1339 0.45 -1.1 46,981 + GFF1339 0.60 -0.9 46,981 + GFF1339 0.60 +0.6 46,981 + GFF1339 0.60 -0.4 46,982 - GFF1339 0.60 +0.4 46,982 - GFF1339 0.60 -0.7 47,038 + GFF1339 0.68 -0.9 47,179 + GFF1339 0.87 -0.1 47,180 - GFF1339 0.87 -0.8 47,314 + +0.0 47,321 - -0.3 47,681 + GFF1340 0.15 +0.3 47,681 + GFF1340 0.15 +1.0 47,787 + GFF1340 0.19 +0.2 47,787 + GFF1340 0.19 -0.2 47,788 - GFF1340 0.19 +0.1 47,788 - GFF1340 0.19 +1.0 47,788 - GFF1340 0.19 -0.1 48,088 + GFF1340 0.31 +0.1 48,088 + GFF1340 0.31 -1.0 48,089 - GFF1340 0.31 +0.9 48,089 - GFF1340 0.31 -0.0 48,120 - GFF1340 0.32 -1.0 48,163 + GFF1340 0.34 +0.4 48,244 + GFF1340 0.37 +0.1 48,245 - GFF1340 0.37 +0.3 48,245 - GFF1340 0.37 +0.5 48,245 - GFF1340 0.37 -0.4 48,248 + GFF1340 0.37 +0.6
Or see this region's nucleotide sequence