Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1326

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1324 and GFF1325 overlap by 29 nucleotidesGFF1325 and GFF1326 are separated by 112 nucleotidesGFF1326 and GFF1327 are separated by 353 nucleotides GFF1324 - Transcriptional activator protein LysR, at 32,883 to 33,818 GFF1324 GFF1325 - Aspartate racemase (EC 5.1.1.13), at 33,790 to 34,497 GFF1325 GFF1326 - Arabinose-proton symporter, at 34,610 to 36,028 GFF1326 GFF1327 - 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125), at 36,382 to 37,143 GFF1327 Position (kb) 34 35 36 37Strain fitness (log2 ratio) -1 0 1at 33.612 kb on - strand, within GFF1324at 33.744 kb on - strandat 33.816 kb on + strandat 33.817 kb on - strandat 33.898 kb on + strand, within GFF1325at 33.899 kb on - strand, within GFF1325at 33.968 kb on + strand, within GFF1325at 34.117 kb on - strand, within GFF1325at 34.286 kb on - strand, within GFF1325at 34.348 kb on + strand, within GFF1325at 34.349 kb on - strand, within GFF1325at 34.369 kb on + strand, within GFF1325at 34.374 kb on + strand, within GFF1325at 34.375 kb on - strand, within GFF1325at 34.422 kb on + strand, within GFF1325at 34.422 kb on + strand, within GFF1325at 34.423 kb on - strand, within GFF1325at 34.442 kb on + strandat 34.442 kb on + strandat 34.542 kb on - strandat 34.611 kb on + strandat 34.751 kb on - strandat 34.838 kb on - strand, within GFF1326at 34.924 kb on + strand, within GFF1326at 35.002 kb on - strand, within GFF1326at 35.108 kb on - strand, within GFF1326at 35.159 kb on - strand, within GFF1326at 35.193 kb on + strand, within GFF1326at 35.193 kb on + strand, within GFF1326at 35.197 kb on + strand, within GFF1326at 35.198 kb on - strand, within GFF1326at 35.242 kb on + strand, within GFF1326at 35.243 kb on - strand, within GFF1326at 35.360 kb on - strand, within GFF1326at 35.511 kb on + strand, within GFF1326at 35.572 kb on - strand, within GFF1326at 35.765 kb on - strand, within GFF1326at 35.963 kb on - strandat 36.016 kb on + strandat 36.016 kb on + strandat 36.020 kb on - strandat 36.050 kb on - strandat 36.075 kb on - strandat 36.075 kb on - strandat 36.107 kb on + strandat 36.111 kb on + strandat 36.247 kb on + strandat 36.279 kb on + strandat 36.406 kb on + strandat 36.407 kb on - strandat 36.407 kb on - strandat 36.407 kb on - strandat 36.418 kb on - strandat 36.420 kb on - strandat 36.509 kb on - strand, within GFF1327at 36.529 kb on - strand, within GFF1327at 36.573 kb on + strand, within GFF1327at 36.573 kb on + strand, within GFF1327at 36.574 kb on - strand, within GFF1327at 36.574 kb on - strand, within GFF1327at 36.574 kb on - strand, within GFF1327at 36.576 kb on - strand, within GFF1327at 36.604 kb on - strand, within GFF1327at 36.718 kb on - strand, within GFF1327at 36.777 kb on + strand, within GFF1327at 36.778 kb on - strand, within GFF1327at 36.889 kb on - strand, within GFF1327at 37.000 kb on - strand, within GFF1327

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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33,612 - GFF1324 0.78 +0.7
33,744 - +0.7
33,816 + -0.1
33,817 - -0.0
33,898 + GFF1325 0.15 -0.9
33,899 - GFF1325 0.15 +0.3
33,968 + GFF1325 0.25 -0.0
34,117 - GFF1325 0.46 +0.0
34,286 - GFF1325 0.70 -0.7
34,348 + GFF1325 0.79 -1.0
34,349 - GFF1325 0.79 +0.2
34,369 + GFF1325 0.82 -0.8
34,374 + GFF1325 0.82 -0.2
34,375 - GFF1325 0.83 +0.3
34,422 + GFF1325 0.89 -0.1
34,422 + GFF1325 0.89 -0.1
34,423 - GFF1325 0.89 +0.3
34,442 + -0.0
34,442 + +0.2
34,542 - -0.7
34,611 + +0.1
34,751 - -0.6
34,838 - GFF1326 0.16 -0.6
34,924 + GFF1326 0.22 +0.4
35,002 - GFF1326 0.28 +0.3
35,108 - GFF1326 0.35 +0.5
35,159 - GFF1326 0.39 -0.6
35,193 + GFF1326 0.41 +0.4
35,193 + GFF1326 0.41 +0.2
35,197 + GFF1326 0.41 +0.1
35,198 - GFF1326 0.41 -0.0
35,242 + GFF1326 0.45 +0.7
35,243 - GFF1326 0.45 -0.6
35,360 - GFF1326 0.53 +0.2
35,511 + GFF1326 0.63 +0.0
35,572 - GFF1326 0.68 +1.0
35,765 - GFF1326 0.81 +0.3
35,963 - -0.8
36,016 + +0.5
36,016 + -0.1
36,020 - -0.2
36,050 - -0.6
36,075 - +1.0
36,075 - +1.0
36,107 + -0.1
36,111 + -0.1
36,247 + -0.7
36,279 + +0.1
36,406 + -0.4
36,407 - +0.1
36,407 - +0.2
36,407 - -0.3
36,418 - +0.3
36,420 - +0.2
36,509 - GFF1327 0.17 -0.2
36,529 - GFF1327 0.19 -0.2
36,573 + GFF1327 0.25 -0.1
36,573 + GFF1327 0.25 +0.5
36,574 - GFF1327 0.25 +0.1
36,574 - GFF1327 0.25 -0.2
36,574 - GFF1327 0.25 +0.5
36,576 - GFF1327 0.25 -0.0
36,604 - GFF1327 0.29 +0.3
36,718 - GFF1327 0.44 -0.1
36,777 + GFF1327 0.52 +0.1
36,778 - GFF1327 0.52 -0.5
36,889 - GFF1327 0.67 -0.1
37,000 - GFF1327 0.81 -0.4

Or see this region's nucleotide sequence