Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1062 and GFF1063 are separated by 48 nucleotides GFF1063 and GFF1064 overlap by 4 nucleotides GFF1064 and GFF1065 are separated by 196 nucleotides GFF1065 and GFF1066 are separated by 12 nucleotides
GFF1062 - Inosine/xanthosine triphosphatase (EC 3.6.1.-), at 244,810 to 245,325
GFF1062
GFF1063 - Phosphoglycerate mutase (EC 5.4.2.1), at 245,374 to 246,021
GFF1063
GFF1064 - Right origin-binding protein, at 246,018 to 246,887
GFF1064
GFF1065 - Conserved uncharacterized protein CreA, at 247,084 to 247,572
GFF1065
GFF1066 - Two-component response regulator CreB, at 247,585 to 248,274
GFF1066
Position (kb) 246
247 Strain fitness (log2 ratio) -2
-1
0
1 at 245.146 kb on - strand, within GFF1062 at 245.230 kb on - strand, within GFF1062 at 245.233 kb on - strand, within GFF1062 at 245.386 kb on + strand at 245.523 kb on + strand, within GFF1063 at 245.540 kb on + strand, within GFF1063 at 245.856 kb on - strand, within GFF1063 at 245.856 kb on - strand, within GFF1063 at 246.012 kb on - strand at 246.097 kb on + strand at 246.106 kb on - strand, within GFF1064 at 246.106 kb on - strand, within GFF1064 at 246.107 kb on + strand, within GFF1064 at 246.146 kb on + strand, within GFF1064 at 246.202 kb on + strand, within GFF1064 at 246.217 kb on + strand, within GFF1064 at 246.296 kb on - strand, within GFF1064 at 246.301 kb on - strand, within GFF1064 at 246.352 kb on + strand, within GFF1064 at 246.368 kb on + strand, within GFF1064 at 246.369 kb on - strand, within GFF1064 at 246.455 kb on - strand, within GFF1064 at 246.455 kb on - strand, within GFF1064 at 246.483 kb on - strand, within GFF1064 at 246.731 kb on - strand, within GFF1064 at 247.191 kb on + strand, within GFF1065 at 247.213 kb on - strand, within GFF1065 at 247.292 kb on + strand, within GFF1065 at 247.462 kb on + strand, within GFF1065 at 247.462 kb on + strand, within GFF1065 at 247.498 kb on + strand, within GFF1065 at 247.645 kb on + strand at 247.885 kb on + strand, within GFF1066 at 247.886 kb on - strand, within GFF1066
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 245,146 - GFF1062 0.65 +0.2 245,230 - GFF1062 0.81 +0.2 245,233 - GFF1062 0.82 -0.2 245,386 + +0.2 245,523 + GFF1063 0.23 -0.1 245,540 + GFF1063 0.26 -0.5 245,856 - GFF1063 0.74 -1.9 245,856 - GFF1063 0.74 -0.9 246,012 - +0.1 246,097 + +0.9 246,106 - GFF1064 0.10 +0.2 246,106 - GFF1064 0.10 -0.4 246,107 + GFF1064 0.10 -0.1 246,146 + GFF1064 0.15 +0.5 246,202 + GFF1064 0.21 -0.1 246,217 + GFF1064 0.23 +0.3 246,296 - GFF1064 0.32 +0.1 246,301 - GFF1064 0.33 +0.3 246,352 + GFF1064 0.38 +0.1 246,368 + GFF1064 0.40 -0.2 246,369 - GFF1064 0.40 -0.2 246,455 - GFF1064 0.50 -1.0 246,455 - GFF1064 0.50 +0.7 246,483 - GFF1064 0.53 +0.0 246,731 - GFF1064 0.82 -0.1 247,191 + GFF1065 0.22 +0.4 247,213 - GFF1065 0.26 -0.0 247,292 + GFF1065 0.43 +0.1 247,462 + GFF1065 0.77 -0.1 247,462 + GFF1065 0.77 +0.2 247,498 + GFF1065 0.85 +0.2 247,645 + +0.2 247,885 + GFF1066 0.43 +0.1 247,886 - GFF1066 0.44 +0.5
Or see this region's nucleotide sequence