Experiment: LB 0.5x in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26095 and PS417_26100 are separated by 8 nucleotides PS417_26100 and PS417_26105 are separated by 65 nucleotides PS417_26105 and PS417_26110 overlap by 4 nucleotides
PS417_26095: PS417_26095 - ornithine cyclodeaminase, at 5,641,115 to 5,642,143
_26095
PS417_26100: PS417_26100 - amino acid ABC transporter, at 5,642,152 to 5,642,913
_26100
PS417_26105: PS417_26105 - ABC transporter permease, at 5,642,979 to 5,643,698
_26105
PS417_26110: PS417_26110 - ABC transporter permease, at 5,643,695 to 5,644,405
_26110
Position (kb) 5642
5643 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5641.290 kb on - strand, within PS417_26095 at 5641.290 kb on - strand, within PS417_26095 at 5641.338 kb on - strand, within PS417_26095 at 5641.377 kb on + strand, within PS417_26095 at 5641.711 kb on + strand, within PS417_26095 at 5641.711 kb on + strand, within PS417_26095 at 5641.712 kb on - strand, within PS417_26095 at 5642.093 kb on - strand at 5642.131 kb on - strand at 5642.136 kb on + strand at 5642.137 kb on - strand at 5642.142 kb on - strand at 5642.145 kb on + strand at 5642.272 kb on + strand, within PS417_26100 at 5642.480 kb on - strand, within PS417_26100 at 5642.572 kb on + strand, within PS417_26100 at 5642.573 kb on - strand, within PS417_26100 at 5642.591 kb on - strand, within PS417_26100 at 5642.591 kb on - strand, within PS417_26100 at 5642.605 kb on + strand, within PS417_26100 at 5642.606 kb on - strand, within PS417_26100 at 5642.705 kb on - strand, within PS417_26100 at 5642.869 kb on + strand at 5642.869 kb on + strand at 5642.869 kb on + strand at 5642.869 kb on + strand at 5642.869 kb on + strand at 5642.869 kb on + strand at 5642.870 kb on - strand at 5642.870 kb on - strand at 5642.871 kb on + strand at 5642.871 kb on + strand at 5642.871 kb on + strand at 5642.872 kb on - strand at 5642.890 kb on + strand at 5642.909 kb on - strand at 5642.909 kb on - strand at 5642.909 kb on - strand at 5642.909 kb on - strand at 5642.909 kb on - strand at 5642.992 kb on + strand at 5642.992 kb on + strand at 5642.992 kb on + strand at 5642.992 kb on + strand at 5642.993 kb on - strand at 5642.993 kb on - strand at 5643.160 kb on + strand, within PS417_26105 at 5643.213 kb on + strand, within PS417_26105 at 5643.214 kb on - strand, within PS417_26105 at 5643.216 kb on + strand, within PS417_26105 at 5643.217 kb on - strand, within PS417_26105 at 5643.540 kb on - strand, within PS417_26105 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.896 kb on + strand, within PS417_26110 at 5643.896 kb on + strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x in EcoFAB_3.5mL remove 5,641,290 - PS417_26095 0.17 -0.4 5,641,290 - PS417_26095 0.17 +1.1 5,641,338 - PS417_26095 0.22 +0.2 5,641,377 + PS417_26095 0.25 +0.0 5,641,711 + PS417_26095 0.58 +1.3 5,641,711 + PS417_26095 0.58 +1.3 5,641,712 - PS417_26095 0.58 +0.2 5,642,093 - -1.6 5,642,131 - -0.1 5,642,136 + +2.9 5,642,137 - -1.1 5,642,142 - -0.1 5,642,145 + -0.2 5,642,272 + PS417_26100 0.16 +0.3 5,642,480 - PS417_26100 0.43 +0.0 5,642,572 + PS417_26100 0.55 -0.2 5,642,573 - PS417_26100 0.55 -1.0 5,642,591 - PS417_26100 0.58 +0.5 5,642,591 - PS417_26100 0.58 -0.5 5,642,605 + PS417_26100 0.59 +0.2 5,642,606 - PS417_26100 0.60 +0.1 5,642,705 - PS417_26100 0.73 +0.1 5,642,869 + -0.3 5,642,869 + +0.2 5,642,869 + +0.6 5,642,869 + -0.1 5,642,869 + +0.1 5,642,869 + -2.4 5,642,870 - -0.5 5,642,870 - -0.6 5,642,871 + -1.8 5,642,871 + -0.3 5,642,871 + -0.2 5,642,872 - +1.2 5,642,890 + -0.3 5,642,909 - +1.5 5,642,909 - +1.2 5,642,909 - -0.4 5,642,909 - +0.7 5,642,909 - +0.7 5,642,992 + +0.5 5,642,992 + +0.1 5,642,992 + -1.4 5,642,992 + +0.5 5,642,993 - -1.7 5,642,993 - -0.2 5,643,160 + PS417_26105 0.25 +0.5 5,643,213 + PS417_26105 0.33 -1.9 5,643,214 - PS417_26105 0.33 -1.4 5,643,216 + PS417_26105 0.33 +0.8 5,643,217 - PS417_26105 0.33 +0.0 5,643,540 - PS417_26105 0.78 -0.4 5,643,890 + PS417_26110 0.27 +0.3 5,643,890 + PS417_26110 0.27 +1.9 5,643,890 + PS417_26110 0.27 +1.1 5,643,890 + PS417_26110 0.27 +0.0 5,643,890 + PS417_26110 0.27 +0.3 5,643,890 + PS417_26110 0.27 -1.3 5,643,890 + PS417_26110 0.27 +0.1 5,643,890 + PS417_26110 0.27 +0.5 5,643,890 + PS417_26110 0.27 +0.3 5,643,890 + PS417_26110 0.27 +0.3 5,643,890 + PS417_26110 0.27 -0.6 5,643,890 + PS417_26110 0.27 -0.1 5,643,890 + PS417_26110 0.27 +1.1 5,643,890 + PS417_26110 0.27 -0.1 5,643,890 + PS417_26110 0.27 -0.2 5,643,890 + PS417_26110 0.27 -2.0 5,643,891 - PS417_26110 0.28 +0.0 5,643,891 - PS417_26110 0.28 -0.7 5,643,891 - PS417_26110 0.28 +0.0 5,643,891 - PS417_26110 0.28 -0.1 5,643,891 - PS417_26110 0.28 +0.0 5,643,891 - PS417_26110 0.28 +0.4 5,643,891 - PS417_26110 0.28 +1.4 5,643,891 - PS417_26110 0.28 +1.4 5,643,891 - PS417_26110 0.28 -0.4 5,643,892 + PS417_26110 0.28 -0.2 5,643,892 + PS417_26110 0.28 -0.3 5,643,892 + PS417_26110 0.28 -0.0 5,643,892 + PS417_26110 0.28 +0.0 5,643,892 + PS417_26110 0.28 -0.3 5,643,892 + PS417_26110 0.28 +0.2 5,643,892 + PS417_26110 0.28 +1.0 5,643,892 + PS417_26110 0.28 -0.4 5,643,892 + PS417_26110 0.28 +0.3 5,643,892 + PS417_26110 0.28 +0.1 5,643,893 - PS417_26110 0.28 -0.6 5,643,893 - PS417_26110 0.28 +0.7 5,643,893 - PS417_26110 0.28 -1.7 5,643,893 - PS417_26110 0.28 +0.6 5,643,896 + PS417_26110 0.28 -0.3 5,643,896 + PS417_26110 0.28 +2.5 5,643,897 - PS417_26110 0.28 +0.9 5,643,897 - PS417_26110 0.28 -0.2 5,643,897 - PS417_26110 0.28 +0.7 5,643,897 - PS417_26110 0.28 +0.1
Or see this region's nucleotide sequence