Strain Fitness in Escherichia coli BW25113 around b4159

Experiment: LB Aerobic with Benzethonium chloride 0.000015625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjeM and yjeN are separated by 51 nucleotidesyjeN and yjeO overlap by 4 nucleotidesyjeO and yjeP are separated by 28 nucleotidesyjeP and psd are separated by 21 nucleotides b4156: yjeM - putative transport (VIMSS), at 4,381,862 to 4,383,364 yjeM b4157: yjeN - hypothetical protein (NCBI), at 4,383,416 to 4,383,730 yjeN b4158: yjeO - conserved inner membrane protein (NCBI), at 4,383,727 to 4,384,041 yjeO b4159: yjeP - predicted mechanosensitive channel (NCBI), at 4,384,070 to 4,387,393 yjeP b4160: psd - phosphatidylserine decarboxylase (NCBI), at 4,387,415 to 4,388,383 psd Position (kb) 4384 4385 4386 4387 4388Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4383.123 kb on + strand, within yjeMat 4383.123 kb on + strand, within yjeMat 4383.166 kb on + strand, within yjeMat 4383.219 kb on + strandat 4383.226 kb on + strandat 4383.330 kb on - strandat 4383.377 kb on + strandat 4383.377 kb on + strandat 4383.384 kb on - strandat 4383.403 kb on - strandat 4383.403 kb on - strandat 4383.403 kb on - strandat 4383.423 kb on + strandat 4383.502 kb on + strand, within yjeNat 4383.502 kb on + strand, within yjeNat 4383.503 kb on - strand, within yjeNat 4383.567 kb on - strand, within yjeNat 4383.570 kb on + strand, within yjeNat 4383.582 kb on + strand, within yjeNat 4383.622 kb on + strand, within yjeNat 4383.635 kb on - strand, within yjeNat 4383.727 kb on - strandat 4383.731 kb on - strandat 4383.731 kb on - strandat 4383.748 kb on - strandat 4383.853 kb on + strand, within yjeOat 4383.853 kb on + strand, within yjeOat 4383.858 kb on + strand, within yjeOat 4383.913 kb on + strand, within yjeOat 4384.045 kb on + strandat 4384.140 kb on - strandat 4384.151 kb on + strandat 4384.197 kb on - strandat 4384.197 kb on - strandat 4384.221 kb on + strandat 4384.251 kb on - strandat 4384.251 kb on - strandat 4384.257 kb on - strandat 4384.257 kb on - strandat 4384.268 kb on - strandat 4384.339 kb on - strandat 4384.364 kb on - strandat 4384.403 kb on + strand, within yjePat 4384.403 kb on + strand, within yjePat 4384.412 kb on + strand, within yjePat 4384.412 kb on + strand, within yjePat 4384.412 kb on + strand, within yjePat 4384.412 kb on + strand, within yjePat 4384.412 kb on + strand, within yjePat 4384.426 kb on - strand, within yjePat 4384.434 kb on + strand, within yjePat 4384.434 kb on + strand, within yjePat 4384.513 kb on + strand, within yjePat 4384.553 kb on + strand, within yjePat 4384.553 kb on + strand, within yjePat 4384.609 kb on + strand, within yjePat 4384.609 kb on + strand, within yjePat 4384.651 kb on + strand, within yjePat 4384.671 kb on - strand, within yjePat 4384.689 kb on - strand, within yjePat 4384.710 kb on + strand, within yjePat 4384.714 kb on - strand, within yjePat 4384.714 kb on - strand, within yjePat 4384.718 kb on - strand, within yjePat 4384.718 kb on - strand, within yjePat 4384.773 kb on + strand, within yjePat 4384.773 kb on + strand, within yjePat 4384.779 kb on + strand, within yjePat 4384.781 kb on - strand, within yjePat 4384.793 kb on - strand, within yjePat 4384.793 kb on - strand, within yjePat 4384.826 kb on + strand, within yjePat 4384.832 kb on - strand, within yjePat 4384.855 kb on + strand, within yjePat 4384.886 kb on + strand, within yjePat 4384.913 kb on - strand, within yjePat 4384.913 kb on - strand, within yjePat 4384.928 kb on + strand, within yjePat 4384.928 kb on + strand, within yjePat 4384.933 kb on + strand, within yjePat 4384.936 kb on - strand, within yjePat 4384.936 kb on - strand, within yjePat 4384.936 kb on - strand, within yjePat 4385.104 kb on + strand, within yjePat 4385.126 kb on + strand, within yjePat 4385.181 kb on - strand, within yjePat 4385.246 kb on + strand, within yjePat 4385.261 kb on - strand, within yjePat 4385.261 kb on - strand, within yjePat 4385.372 kb on - strand, within yjePat 4385.391 kb on - strand, within yjePat 4385.458 kb on + strand, within yjePat 4385.478 kb on + strand, within yjePat 4385.493 kb on + strand, within yjePat 4385.531 kb on + strand, within yjePat 4385.531 kb on + strand, within yjePat 4385.546 kb on + strand, within yjePat 4385.572 kb on + strand, within yjePat 4385.572 kb on + strand, within yjePat 4385.588 kb on + strand, within yjePat 4385.605 kb on - strand, within yjePat 4385.605 kb on - strand, within yjePat 4385.615 kb on - strand, within yjePat 4385.665 kb on + strand, within yjePat 4385.665 kb on + strand, within yjePat 4385.665 kb on + strand, within yjePat 4385.691 kb on + strand, within yjePat 4385.696 kb on - strand, within yjePat 4385.792 kb on - strand, within yjePat 4385.803 kb on - strand, within yjePat 4385.818 kb on - strand, within yjePat 4385.844 kb on + strand, within yjePat 4385.925 kb on + strand, within yjePat 4385.949 kb on + strand, within yjePat 4385.974 kb on + strand, within yjePat 4385.981 kb on + strand, within yjePat 4385.981 kb on + strand, within yjePat 4386.007 kb on - strand, within yjePat 4386.029 kb on - strand, within yjePat 4386.041 kb on + strand, within yjePat 4386.050 kb on - strand, within yjePat 4386.079 kb on - strand, within yjePat 4386.080 kb on + strand, within yjePat 4386.099 kb on + strand, within yjePat 4386.099 kb on + strand, within yjePat 4386.107 kb on - strand, within yjePat 4386.126 kb on - strand, within yjePat 4386.170 kb on - strand, within yjePat 4386.188 kb on + strand, within yjePat 4386.188 kb on + strand, within yjePat 4386.193 kb on - strand, within yjePat 4386.209 kb on - strand, within yjePat 4386.230 kb on + strand, within yjePat 4386.230 kb on + strand, within yjePat 4386.287 kb on - strand, within yjePat 4386.296 kb on + strand, within yjePat 4386.299 kb on - strand, within yjePat 4386.299 kb on - strand, within yjePat 4386.399 kb on - strand, within yjePat 4386.423 kb on + strand, within yjePat 4386.451 kb on + strand, within yjePat 4386.451 kb on + strand, within yjePat 4386.455 kb on + strand, within yjePat 4386.501 kb on + strand, within yjePat 4386.504 kb on - strand, within yjePat 4386.514 kb on - strand, within yjePat 4386.544 kb on - strand, within yjePat 4386.544 kb on - strand, within yjePat 4386.548 kb on + strand, within yjePat 4386.565 kb on + strand, within yjePat 4386.565 kb on + strand, within yjePat 4386.600 kb on - strand, within yjePat 4386.644 kb on + strand, within yjePat 4386.644 kb on + strand, within yjePat 4386.692 kb on - strand, within yjePat 4386.779 kb on - strand, within yjePat 4386.829 kb on - strand, within yjePat 4386.841 kb on + strand, within yjePat 4386.853 kb on - strand, within yjePat 4386.861 kb on - strand, within yjePat 4386.861 kb on - strand, within yjePat 4386.863 kb on - strand, within yjePat 4387.015 kb on - strand, within yjePat 4387.015 kb on - strand, within yjePat 4387.020 kb on - strand, within yjePat 4387.025 kb on - strand, within yjePat 4387.050 kb on - strand, within yjePat 4387.050 kb on - strand, within yjePat 4387.115 kb on - strandat 4387.138 kb on - strandat 4387.150 kb on - strandat 4387.155 kb on - strandat 4387.201 kb on + strandat 4387.201 kb on + strandat 4387.250 kb on - strandat 4387.250 kb on - strandat 4387.253 kb on + strandat 4387.260 kb on - strandat 4387.260 kb on - strandat 4387.260 kb on - strandat 4387.270 kb on - strandat 4387.270 kb on - strandat 4387.345 kb on + strandat 4387.345 kb on + strandat 4387.345 kb on + strandat 4387.345 kb on + strandat 4387.353 kb on - strandat 4387.355 kb on - strandat 4387.400 kb on - strandat 4387.413 kb on + strandat 4387.494 kb on + strandat 4387.531 kb on - strand, within psdat 4388.388 kb on + strandat 4388.388 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Benzethonium chloride 0.000015625 mM
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4,383,123 + yjeM b4156 0.84 +0.9
4,383,123 + yjeM b4156 0.84 -1.0
4,383,166 + yjeM b4156 0.87 -1.0
4,383,219 + -0.1
4,383,226 + +0.7
4,383,330 - +2.7
4,383,377 + -0.3
4,383,377 + -1.2
4,383,384 - -0.7
4,383,403 - +0.3
4,383,403 - +0.9
4,383,403 - -0.6
4,383,423 + -0.7
4,383,502 + yjeN b4157 0.27 +1.1
4,383,502 + yjeN b4157 0.27 -0.2
4,383,503 - yjeN b4157 0.28 -0.6
4,383,567 - yjeN b4157 0.48 -0.9
4,383,570 + yjeN b4157 0.49 -1.0
4,383,582 + yjeN b4157 0.53 +0.2
4,383,622 + yjeN b4157 0.65 -0.6
4,383,635 - yjeN b4157 0.70 +0.5
4,383,727 - -0.3
4,383,731 - -0.7
4,383,731 - +0.4
4,383,748 - -1.1
4,383,853 + yjeO b4158 0.40 +0.4
4,383,853 + yjeO b4158 0.40 -1.7
4,383,858 + yjeO b4158 0.42 -0.6
4,383,913 + yjeO b4158 0.59 +0.1
4,384,045 + +0.6
4,384,140 - -4.8
4,384,151 + -4.7
4,384,197 - -2.6
4,384,197 - -2.1
4,384,221 + -0.7
4,384,251 - -2.7
4,384,251 - -2.3
4,384,257 - -2.6
4,384,257 - -2.4
4,384,268 - -2.6
4,384,339 - -3.8
4,384,364 - -3.6
4,384,403 + yjeP b4159 0.10 -5.2
4,384,403 + yjeP b4159 0.10 -5.2
4,384,412 + yjeP b4159 0.10 -1.4
4,384,412 + yjeP b4159 0.10 -3.1
4,384,412 + yjeP b4159 0.10 -3.1
4,384,412 + yjeP b4159 0.10 -3.9
4,384,412 + yjeP b4159 0.10 -3.8
4,384,426 - yjeP b4159 0.11 -2.7
4,384,434 + yjeP b4159 0.11 -2.1
4,384,434 + yjeP b4159 0.11 -0.7
4,384,513 + yjeP b4159 0.13 -4.0
4,384,553 + yjeP b4159 0.15 -2.8
4,384,553 + yjeP b4159 0.15 -1.4
4,384,609 + yjeP b4159 0.16 -2.7
4,384,609 + yjeP b4159 0.16 -2.1
4,384,651 + yjeP b4159 0.17 -2.9
4,384,671 - yjeP b4159 0.18 -4.2
4,384,689 - yjeP b4159 0.19 -2.8
4,384,710 + yjeP b4159 0.19 -4.1
4,384,714 - yjeP b4159 0.19 -1.7
4,384,714 - yjeP b4159 0.19 -3.0
4,384,718 - yjeP b4159 0.19 -5.0
4,384,718 - yjeP b4159 0.19 -2.1
4,384,773 + yjeP b4159 0.21 -1.4
4,384,773 + yjeP b4159 0.21 -0.9
4,384,779 + yjeP b4159 0.21 -5.5
4,384,781 - yjeP b4159 0.21 -2.7
4,384,793 - yjeP b4159 0.22 -3.6
4,384,793 - yjeP b4159 0.22 -3.3
4,384,826 + yjeP b4159 0.23 -3.8
4,384,832 - yjeP b4159 0.23 -3.3
4,384,855 + yjeP b4159 0.24 -3.5
4,384,886 + yjeP b4159 0.25 -3.4
4,384,913 - yjeP b4159 0.25 -2.8
4,384,913 - yjeP b4159 0.25 -2.7
4,384,928 + yjeP b4159 0.26 -2.9
4,384,928 + yjeP b4159 0.26 -1.9
4,384,933 + yjeP b4159 0.26 -1.4
4,384,936 - yjeP b4159 0.26 -1.4
4,384,936 - yjeP b4159 0.26 -2.9
4,384,936 - yjeP b4159 0.26 -1.7
4,385,104 + yjeP b4159 0.31 -4.1
4,385,126 + yjeP b4159 0.32 -4.0
4,385,181 - yjeP b4159 0.33 -5.0
4,385,246 + yjeP b4159 0.35 -2.9
4,385,261 - yjeP b4159 0.36 -0.9
4,385,261 - yjeP b4159 0.36 -2.4
4,385,372 - yjeP b4159 0.39 -3.7
4,385,391 - yjeP b4159 0.40 -4.6
4,385,458 + yjeP b4159 0.42 -3.6
4,385,478 + yjeP b4159 0.42 -2.3
4,385,493 + yjeP b4159 0.43 -1.6
4,385,531 + yjeP b4159 0.44 -4.8
4,385,531 + yjeP b4159 0.44 -3.0
4,385,546 + yjeP b4159 0.44 -3.9
4,385,572 + yjeP b4159 0.45 -2.1
4,385,572 + yjeP b4159 0.45 -2.4
4,385,588 + yjeP b4159 0.46 -1.4
4,385,605 - yjeP b4159 0.46 -5.1
4,385,605 - yjeP b4159 0.46 -3.4
4,385,615 - yjeP b4159 0.46 -3.2
4,385,665 + yjeP b4159 0.48 -2.1
4,385,665 + yjeP b4159 0.48 -2.9
4,385,665 + yjeP b4159 0.48 -3.5
4,385,691 + yjeP b4159 0.49 -5.5
4,385,696 - yjeP b4159 0.49 -0.9
4,385,792 - yjeP b4159 0.52 -3.7
4,385,803 - yjeP b4159 0.52 -5.0
4,385,818 - yjeP b4159 0.53 -4.4
4,385,844 + yjeP b4159 0.53 -2.1
4,385,925 + yjeP b4159 0.56 -3.2
4,385,949 + yjeP b4159 0.57 -5.0
4,385,974 + yjeP b4159 0.57 -1.9
4,385,981 + yjeP b4159 0.57 -0.7
4,385,981 + yjeP b4159 0.57 -5.1
4,386,007 - yjeP b4159 0.58 -1.9
4,386,029 - yjeP b4159 0.59 -3.1
4,386,041 + yjeP b4159 0.59 -3.9
4,386,050 - yjeP b4159 0.60 -3.0
4,386,079 - yjeP b4159 0.60 -2.4
4,386,080 + yjeP b4159 0.60 -1.1
4,386,099 + yjeP b4159 0.61 -2.1
4,386,099 + yjeP b4159 0.61 -2.3
4,386,107 - yjeP b4159 0.61 -3.9
4,386,126 - yjeP b4159 0.62 -2.7
4,386,170 - yjeP b4159 0.63 -4.4
4,386,188 + yjeP b4159 0.64 -3.6
4,386,188 + yjeP b4159 0.64 -1.4
4,386,193 - yjeP b4159 0.64 -3.0
4,386,209 - yjeP b4159 0.64 -3.7
4,386,230 + yjeP b4159 0.65 +0.9
4,386,230 + yjeP b4159 0.65 -0.1
4,386,287 - yjeP b4159 0.67 -3.9
4,386,296 + yjeP b4159 0.67 -5.3
4,386,299 - yjeP b4159 0.67 -1.7
4,386,299 - yjeP b4159 0.67 -1.7
4,386,399 - yjeP b4159 0.70 -0.1
4,386,423 + yjeP b4159 0.71 -4.1
4,386,451 + yjeP b4159 0.72 -0.1
4,386,451 + yjeP b4159 0.72 -1.7
4,386,455 + yjeP b4159 0.72 -2.3
4,386,501 + yjeP b4159 0.73 -4.3
4,386,504 - yjeP b4159 0.73 -4.7
4,386,514 - yjeP b4159 0.74 -3.9
4,386,544 - yjeP b4159 0.74 -2.1
4,386,544 - yjeP b4159 0.74 -3.3
4,386,548 + yjeP b4159 0.75 -1.4
4,386,565 + yjeP b4159 0.75 -1.1
4,386,565 + yjeP b4159 0.75 -2.7
4,386,600 - yjeP b4159 0.76 -2.8
4,386,644 + yjeP b4159 0.77 -3.0
4,386,644 + yjeP b4159 0.77 -2.8
4,386,692 - yjeP b4159 0.79 -5.0
4,386,779 - yjeP b4159 0.81 -5.6
4,386,829 - yjeP b4159 0.83 -3.6
4,386,841 + yjeP b4159 0.83 -3.4
4,386,853 - yjeP b4159 0.84 -4.1
4,386,861 - yjeP b4159 0.84 -3.7
4,386,861 - yjeP b4159 0.84 -3.6
4,386,863 - yjeP b4159 0.84 -3.4
4,387,015 - yjeP b4159 0.89 -4.5
4,387,015 - yjeP b4159 0.89 -1.9
4,387,020 - yjeP b4159 0.89 -3.3
4,387,025 - yjeP b4159 0.89 -4.3
4,387,050 - yjeP b4159 0.90 -3.1
4,387,050 - yjeP b4159 0.90 -1.9
4,387,115 - -3.5
4,387,138 - -1.7
4,387,150 - -2.9
4,387,155 - -3.2
4,387,201 + -2.6
4,387,201 + -3.6
4,387,250 - -3.4
4,387,250 - -3.9
4,387,253 + -2.3
4,387,260 - -1.4
4,387,260 - -3.4
4,387,260 - -3.5
4,387,270 - -3.7
4,387,270 - -5.0
4,387,345 + -2.4
4,387,345 + -5.2
4,387,345 + -3.4
4,387,345 + -2.4
4,387,353 - -4.4
4,387,355 - -0.4
4,387,400 - -0.8
4,387,413 + -1.9
4,387,494 + -4.1
4,387,531 - psd b4160 0.12 +1.3
4,388,388 + -1.1
4,388,388 + -0.7

Or see this region's nucleotide sequence