Experiment: LB in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26830 and PS417_26835 are separated by 29 nucleotides PS417_26835 and PS417_26840 are separated by 33 nucleotides PS417_26840 and PS417_26845 are separated by 146 nucleotides
PS417_26830: PS417_26830 - alpha/beta hydrolase, at 5,793,607 to 5,794,602
_26830
PS417_26835: PS417_26835 - 3-mercaptopyruvate sulfurtransferase, at 5,794,632 to 5,795,495
_26835
PS417_26840: PS417_26840 - TetR family transcriptional regulator, at 5,795,529 to 5,796,200
_26840
PS417_26845: PS417_26845 - coniferyl aldehyde dehydrogenase, at 5,796,347 to 5,797,774
_26845
Position (kb) 5794
5795
5796 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5793.696 kb on + strand at 5793.696 kb on + strand at 5793.835 kb on + strand, within PS417_26830 at 5793.937 kb on + strand, within PS417_26830 at 5793.938 kb on - strand, within PS417_26830 at 5793.938 kb on - strand, within PS417_26830 at 5794.012 kb on + strand, within PS417_26830 at 5794.012 kb on + strand, within PS417_26830 at 5794.012 kb on + strand, within PS417_26830 at 5794.013 kb on - strand, within PS417_26830 at 5794.013 kb on - strand, within PS417_26830 at 5794.165 kb on + strand, within PS417_26830 at 5794.198 kb on + strand, within PS417_26830 at 5794.199 kb on - strand, within PS417_26830 at 5794.354 kb on + strand, within PS417_26830 at 5794.357 kb on + strand, within PS417_26830 at 5794.381 kb on + strand, within PS417_26830 at 5794.455 kb on - strand, within PS417_26830 at 5794.552 kb on + strand at 5794.553 kb on - strand at 5794.555 kb on + strand at 5794.555 kb on + strand at 5794.569 kb on + strand at 5794.626 kb on + strand at 5794.627 kb on - strand at 5794.702 kb on + strand at 5794.703 kb on - strand at 5794.703 kb on - strand at 5794.709 kb on + strand at 5794.908 kb on - strand, within PS417_26835 at 5795.213 kb on - strand, within PS417_26835 at 5795.213 kb on - strand, within PS417_26835 at 5795.506 kb on + strand at 5795.530 kb on + strand at 5795.531 kb on - strand at 5795.580 kb on + strand at 5795.581 kb on - strand at 5795.645 kb on - strand, within PS417_26840 at 5795.806 kb on + strand, within PS417_26840 at 5795.807 kb on - strand, within PS417_26840 at 5795.807 kb on - strand, within PS417_26840 at 5796.019 kb on + strand, within PS417_26840 at 5796.019 kb on + strand, within PS417_26840 at 5796.067 kb on + strand, within PS417_26840 at 5796.067 kb on + strand, within PS417_26840 at 5796.067 kb on + strand, within PS417_26840 at 5796.187 kb on - strand at 5796.218 kb on - strand at 5796.218 kb on - strand at 5796.258 kb on - strand at 5796.275 kb on + strand at 5796.275 kb on + strand at 5796.294 kb on - strand at 5796.325 kb on + strand at 5796.325 kb on + strand at 5796.325 kb on + strand at 5796.325 kb on + strand at 5796.325 kb on + strand at 5796.326 kb on - strand at 5796.328 kb on - strand at 5796.366 kb on - strand at 5796.366 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL remove 5,793,696 + -0.7 5,793,696 + -0.7 5,793,835 + PS417_26830 0.23 +2.3 5,793,937 + PS417_26830 0.33 +0.4 5,793,938 - PS417_26830 0.33 -0.4 5,793,938 - PS417_26830 0.33 -0.4 5,794,012 + PS417_26830 0.41 +0.8 5,794,012 + PS417_26830 0.41 +0.4 5,794,012 + PS417_26830 0.41 -0.6 5,794,013 - PS417_26830 0.41 -1.1 5,794,013 - PS417_26830 0.41 -0.8 5,794,165 + PS417_26830 0.56 +0.0 5,794,198 + PS417_26830 0.59 -0.3 5,794,199 - PS417_26830 0.59 -0.1 5,794,354 + PS417_26830 0.75 +0.3 5,794,357 + PS417_26830 0.75 -0.6 5,794,381 + PS417_26830 0.78 -1.2 5,794,455 - PS417_26830 0.85 +0.2 5,794,552 + -1.1 5,794,553 - -0.4 5,794,555 + -0.3 5,794,555 + +0.2 5,794,569 + +0.1 5,794,626 + +0.1 5,794,627 - +1.6 5,794,702 + -0.2 5,794,703 - +0.8 5,794,703 - -0.2 5,794,709 + -0.3 5,794,908 - PS417_26835 0.32 +0.0 5,795,213 - PS417_26835 0.67 +0.8 5,795,213 - PS417_26835 0.67 +0.5 5,795,506 + -0.4 5,795,530 + +0.7 5,795,531 - -0.9 5,795,580 + -0.7 5,795,581 - -0.5 5,795,645 - PS417_26840 0.17 -0.5 5,795,806 + PS417_26840 0.41 +0.8 5,795,807 - PS417_26840 0.41 -0.2 5,795,807 - PS417_26840 0.41 -0.3 5,796,019 + PS417_26840 0.73 +0.2 5,796,019 + PS417_26840 0.73 -0.4 5,796,067 + PS417_26840 0.80 +0.4 5,796,067 + PS417_26840 0.80 +0.8 5,796,067 + PS417_26840 0.80 -1.0 5,796,187 - +0.2 5,796,218 - -1.8 5,796,218 - +0.2 5,796,258 - -0.6 5,796,275 + +0.0 5,796,275 + +0.2 5,796,294 - -0.3 5,796,325 + +1.1 5,796,325 + -0.4 5,796,325 + -0.2 5,796,325 + -0.1 5,796,325 + +0.3 5,796,326 - -0.2 5,796,328 - +0.4 5,796,366 - -0.8 5,796,366 - +0.5
Or see this region's nucleotide sequence