Strain Fitness in Pseudomonas simiae WCS417 around PS417_01490

Experiment: LB in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01480 and PS417_01485 overlap by 20 nucleotidesPS417_01485 and PS417_01490 are separated by 38 nucleotidesPS417_01490 and PS417_01495 are separated by 74 nucleotidesPS417_01495 and PS417_01500 are separated by 13 nucleotides PS417_01480: PS417_01480 - SAM-dependent methyltransferase, at 328,947 to 330,134 _01480 PS417_01485: PS417_01485 - ABC transporter permease, at 330,115 to 330,804 _01485 PS417_01490: PS417_01490 - ABC transporter permease, at 330,843 to 331,538 _01490 PS417_01495: PS417_01495 - amino acid ABC transporter, at 331,613 to 332,365 _01495 PS417_01500: PS417_01500 - amino acid transporter, at 332,379 to 333,152 _01500 Position (kb) 330 331 332Strain fitness (log2 ratio) -3 -2 -1 0 1at 329.879 kb on + strand, within PS417_01480at 329.879 kb on + strand, within PS417_01480at 330.033 kb on + strandat 330.033 kb on + strandat 330.172 kb on + strandat 330.182 kb on + strandat 330.182 kb on + strandat 330.198 kb on - strand, within PS417_01485at 330.198 kb on - strand, within PS417_01485at 330.236 kb on + strand, within PS417_01485at 330.241 kb on - strand, within PS417_01485at 330.380 kb on + strand, within PS417_01485at 330.380 kb on + strand, within PS417_01485at 330.380 kb on + strand, within PS417_01485at 330.381 kb on - strand, within PS417_01485at 330.381 kb on - strand, within PS417_01485at 330.480 kb on - strand, within PS417_01485at 330.584 kb on + strand, within PS417_01485at 330.588 kb on - strand, within PS417_01485at 330.639 kb on - strand, within PS417_01485at 330.644 kb on + strand, within PS417_01485at 330.645 kb on - strand, within PS417_01485at 330.662 kb on + strand, within PS417_01485at 330.663 kb on - strand, within PS417_01485at 330.663 kb on - strand, within PS417_01485at 330.833 kb on + strandat 331.324 kb on + strand, within PS417_01490at 331.324 kb on + strand, within PS417_01490at 331.356 kb on - strand, within PS417_01490at 331.375 kb on + strand, within PS417_01490at 331.405 kb on + strand, within PS417_01490at 331.406 kb on - strand, within PS417_01490at 331.441 kb on - strand, within PS417_01490at 331.635 kb on + strandat 331.635 kb on + strandat 331.635 kb on + strandat 331.636 kb on - strandat 331.636 kb on - strandat 331.656 kb on + strandat 331.656 kb on + strandat 331.657 kb on - strandat 331.752 kb on - strand, within PS417_01495at 331.809 kb on + strand, within PS417_01495at 331.818 kb on + strand, within PS417_01495at 331.818 kb on + strand, within PS417_01495at 331.818 kb on + strand, within PS417_01495at 331.818 kb on + strand, within PS417_01495at 331.819 kb on - strand, within PS417_01495at 331.819 kb on - strand, within PS417_01495at 331.819 kb on - strand, within PS417_01495at 331.926 kb on + strand, within PS417_01495at 331.926 kb on + strand, within PS417_01495at 331.927 kb on - strandat 331.927 kb on - strand, within PS417_01495at 332.041 kb on - strand, within PS417_01495at 332.041 kb on - strand, within PS417_01495at 332.160 kb on + strand, within PS417_01495at 332.160 kb on + strand, within PS417_01495at 332.160 kb on + strand, within PS417_01495at 332.160 kb on + strand, within PS417_01495at 332.160 kb on + strand, within PS417_01495at 332.161 kb on - strand, within PS417_01495at 332.161 kb on - strand, within PS417_01495at 332.161 kb on - strand, within PS417_01495at 332.161 kb on - strand, within PS417_01495at 332.488 kb on + strand, within PS417_01500

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL
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329,879 + PS417_01480 0.78 +0.3
329,879 + PS417_01480 0.78 +1.3
330,033 + +1.2
330,033 + +0.4
330,172 + +0.7
330,182 + +0.2
330,182 + +1.2
330,198 - PS417_01485 0.12 -0.0
330,198 - PS417_01485 0.12 -2.3
330,236 + PS417_01485 0.18 +1.6
330,241 - PS417_01485 0.18 +0.3
330,380 + PS417_01485 0.38 -1.3
330,380 + PS417_01485 0.38 -2.2
330,380 + PS417_01485 0.38 +0.2
330,381 - PS417_01485 0.39 +0.8
330,381 - PS417_01485 0.39 -0.4
330,480 - PS417_01485 0.53 +0.3
330,584 + PS417_01485 0.68 -0.7
330,588 - PS417_01485 0.69 +0.7
330,639 - PS417_01485 0.76 -1.0
330,644 + PS417_01485 0.77 -0.5
330,645 - PS417_01485 0.77 +0.1
330,662 + PS417_01485 0.79 -1.2
330,663 - PS417_01485 0.79 -0.6
330,663 - PS417_01485 0.79 -0.1
330,833 + -0.2
331,324 + PS417_01490 0.69 -0.4
331,324 + PS417_01490 0.69 +0.0
331,356 - PS417_01490 0.74 -0.5
331,375 + PS417_01490 0.76 +0.1
331,405 + PS417_01490 0.81 -0.6
331,406 - PS417_01490 0.81 +0.2
331,441 - PS417_01490 0.86 +0.6
331,635 + -0.7
331,635 + -0.2
331,635 + -0.9
331,636 - -0.4
331,636 - -0.3
331,656 + +0.5
331,656 + -0.2
331,657 - +0.0
331,752 - PS417_01495 0.18 +0.2
331,809 + PS417_01495 0.26 +0.3
331,818 + PS417_01495 0.27 +0.8
331,818 + PS417_01495 0.27 -0.5
331,818 + PS417_01495 0.27 -0.9
331,818 + PS417_01495 0.27 +0.1
331,819 - PS417_01495 0.27 -0.2
331,819 - PS417_01495 0.27 +0.3
331,819 - PS417_01495 0.27 -3.0
331,926 + PS417_01495 0.42 +0.6
331,926 + PS417_01495 0.42 -1.2
331,927 - -0.5
331,927 - PS417_01495 0.42 -0.6
332,041 - PS417_01495 0.57 -0.2
332,041 - PS417_01495 0.57 -1.5
332,160 + PS417_01495 0.73 +0.9
332,160 + PS417_01495 0.73 +0.3
332,160 + PS417_01495 0.73 -0.3
332,160 + PS417_01495 0.73 +1.1
332,160 + PS417_01495 0.73 -1.7
332,161 - PS417_01495 0.73 -0.4
332,161 - PS417_01495 0.73 -0.9
332,161 - PS417_01495 0.73 +0.1
332,161 - PS417_01495 0.73 -0.2
332,488 + PS417_01500 0.14 +0.5

Or see this region's nucleotide sequence