Experiment: LB in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01380 and PS417_01385 are separated by 519 nucleotides PS417_01385 and PS417_01390 are separated by 62 nucleotides
PS417_01380: PS417_01380 - nucleotide cyclase, at 300,536 to 301,876
_01380
PS417_01385: PS417_01385 - NAD-dependent dehydratase, at 302,396 to 303,328
_01385
PS417_01390: PS417_01390 - PbsX family transcriptional regulator, at 303,391 to 306,204
_01390
Position (kb) 302
303
304 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 301.526 kb on + strand, within PS417_01380 at 301.625 kb on + strand, within PS417_01380 at 301.856 kb on - strand at 301.966 kb on + strand at 301.967 kb on - strand at 301.967 kb on - strand at 301.967 kb on - strand at 301.967 kb on - strand at 302.029 kb on - strand at 302.081 kb on + strand at 302.081 kb on + strand at 302.082 kb on - strand at 302.341 kb on + strand at 302.382 kb on - strand at 302.404 kb on - strand at 302.438 kb on - strand at 302.477 kb on + strand at 302.512 kb on + strand, within PS417_01385 at 302.832 kb on - strand, within PS417_01385 at 302.859 kb on - strand, within PS417_01385 at 302.859 kb on - strand at 302.861 kb on + strand, within PS417_01385 at 302.874 kb on - strand, within PS417_01385 at 303.007 kb on + strand, within PS417_01385 at 303.008 kb on - strand, within PS417_01385 at 303.048 kb on - strand, within PS417_01385 at 303.120 kb on + strand, within PS417_01385 at 303.201 kb on - strand, within PS417_01385 at 303.245 kb on - strand at 303.326 kb on + strand at 303.326 kb on + strand at 303.326 kb on + strand at 303.354 kb on + strand at 303.354 kb on + strand at 303.355 kb on - strand at 303.362 kb on - strand at 303.386 kb on - strand at 303.495 kb on - strand at 303.643 kb on + strand at 303.644 kb on - strand at 303.817 kb on + strand, within PS417_01390 at 304.139 kb on - strand, within PS417_01390
Per-strain Table
Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL remove 301,526 + PS417_01380 0.74 +1.4 301,625 + PS417_01380 0.81 +2.8 301,856 - +0.3 301,966 + +0.1 301,967 - +0.4 301,967 - +0.9 301,967 - -1.7 301,967 - +0.2 302,029 - +0.2 302,081 + +1.3 302,081 + -0.3 302,082 - +0.0 302,341 + -1.5 302,382 - -0.2 302,404 - -2.0 302,438 - -2.7 302,477 + -0.3 302,512 + PS417_01385 0.12 +0.1 302,832 - PS417_01385 0.47 -1.2 302,859 - PS417_01385 0.50 -1.9 302,859 - +1.8 302,861 + PS417_01385 0.50 -0.6 302,874 - PS417_01385 0.51 -1.3 303,007 + PS417_01385 0.65 -0.6 303,008 - PS417_01385 0.66 -3.2 303,048 - PS417_01385 0.70 -0.7 303,120 + PS417_01385 0.78 -1.0 303,201 - PS417_01385 0.86 +0.8 303,245 - -1.6 303,326 + +0.0 303,326 + -3.2 303,326 + -1.0 303,354 + -3.6 303,354 + -0.9 303,355 - -0.7 303,362 - -0.2 303,386 - -2.3 303,495 - -1.9 303,643 + -1.8 303,644 - -2.5 303,817 + PS417_01390 0.15 -1.6 304,139 - PS417_01390 0.27 -1.7
Or see this region's nucleotide sequence