Strain Fitness in Escherichia coli BW25113 around b4289
Experiment: LB Aerobic with Zinc Pyrithione 0.0000025 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB Aerobic with Zinc Pyrithione 0.0000025 mM |
---|---|---|---|---|---|
remove | |||||
4,509,441 | + | -1.4 | |||
4,509,498 | - | -0.3 | |||
4,509,619 | - | fecD | b4288 | 0.14 | +0.0 |
4,509,635 | + | fecD | b4288 | 0.16 | +0.8 |
4,509,654 | + | fecD | b4288 | 0.18 | +0.2 |
4,509,671 | + | fecD | b4288 | 0.20 | -0.1 |
4,509,671 | + | fecD | b4288 | 0.20 | -1.3 |
4,509,672 | - | fecD | b4288 | 0.20 | -1.6 |
4,509,673 | + | fecD | b4288 | 0.20 | -0.6 |
4,509,673 | + | fecD | b4288 | 0.20 | +0.2 |
4,509,685 | - | fecD | b4288 | 0.21 | +0.4 |
4,509,685 | - | fecD | b4288 | 0.21 | -1.9 |
4,509,690 | + | fecD | b4288 | 0.22 | -1.3 |
4,509,698 | - | fecD | b4288 | 0.23 | -0.2 |
4,509,698 | - | fecD | b4288 | 0.23 | +0.4 |
4,509,821 | - | fecD | b4288 | 0.36 | -1.4 |
4,509,909 | + | fecD | b4288 | 0.45 | +0.4 |
4,509,926 | + | fecD | b4288 | 0.46 | +0.1 |
4,510,001 | + | fecD | b4288 | 0.54 | -0.8 |
4,510,028 | - | fecD | b4288 | 0.57 | +0.5 |
4,510,102 | + | fecD | b4288 | 0.65 | -0.5 |
4,510,118 | + | fecD | b4288 | 0.67 | -1.0 |
4,510,118 | + | fecD | b4288 | 0.67 | -1.1 |
4,510,143 | + | fecD | b4288 | 0.69 | -0.2 |
4,510,143 | + | fecD | b4288 | 0.69 | -0.7 |
4,510,143 | + | fecD | b4288 | 0.69 | -1.2 |
4,510,170 | + | fecD | b4288 | 0.72 | -1.2 |
4,510,170 | + | fecD | b4288 | 0.72 | -1.2 |
4,510,178 | - | fecD | b4288 | 0.73 | +0.8 |
4,510,203 | - | fecD | b4288 | 0.75 | -1.5 |
4,510,203 | - | fecD | b4288 | 0.75 | -0.4 |
4,510,212 | - | fecD | b4288 | 0.76 | -1.3 |
4,510,255 | + | fecD | b4288 | 0.81 | -1.7 |
4,510,285 | - | fecD | b4288 | 0.84 | -0.7 |
4,510,285 | - | fecD | b4288 | 0.84 | -0.6 |
4,510,302 | - | fecD | b4288 | 0.86 | -0.3 |
4,510,302 | - | fecD | b4288 | 0.86 | -1.2 |
4,510,353 | + | +0.8 | |||
4,510,376 | + | -1.2 | |||
4,510,376 | + | +0.8 | |||
4,510,381 | + | -1.3 | |||
4,510,384 | - | -1.3 | |||
4,510,401 | + | -0.2 | |||
4,510,401 | - | +0.0 | |||
4,510,410 | - | -0.2 | |||
4,510,410 | - | -0.2 | |||
4,510,471 | + | +0.5 | |||
4,510,507 | + | -0.9 | |||
4,510,546 | - | fecC | b4289 | 0.11 | -0.2 |
4,510,546 | - | fecC | b4289 | 0.11 | -1.6 |
4,510,578 | + | fecC | b4289 | 0.14 | -1.2 |
4,510,580 | - | fecC | b4289 | 0.15 | -0.2 |
4,510,581 | - | fecC | b4289 | 0.15 | -0.5 |
4,510,617 | - | fecC | b4289 | 0.18 | +0.4 |
4,510,642 | - | fecC | b4289 | 0.21 | +0.1 |
4,510,642 | - | fecC | b4289 | 0.21 | -0.6 |
4,510,685 | - | fecC | b4289 | 0.25 | -0.8 |
4,510,687 | - | fecC | b4289 | 0.25 | -0.1 |
4,510,692 | - | fecC | b4289 | 0.26 | -0.2 |
4,510,702 | - | fecC | b4289 | 0.27 | +0.2 |
4,510,702 | - | fecC | b4289 | 0.27 | -0.3 |
4,510,707 | - | fecC | b4289 | 0.27 | -1.0 |
4,510,711 | + | fecC | b4289 | 0.28 | -0.6 |
4,510,729 | - | fecC | b4289 | 0.30 | -1.6 |
4,510,743 | - | fecC | b4289 | 0.31 | -0.6 |
4,510,745 | + | fecC | b4289 | 0.31 | -0.2 |
4,510,745 | + | fecC | b4289 | 0.31 | -0.2 |
4,510,748 | + | fecC | b4289 | 0.31 | -0.4 |
4,510,748 | + | fecC | b4289 | 0.31 | -0.2 |
4,510,750 | - | fecC | b4289 | 0.32 | -1.3 |
4,510,750 | - | fecC | b4289 | 0.32 | -0.6 |
4,510,783 | - | fecC | b4289 | 0.35 | -1.3 |
4,510,800 | + | fecC | b4289 | 0.37 | -0.5 |
4,510,805 | - | fecC | b4289 | 0.37 | +0.8 |
4,510,819 | - | fecC | b4289 | 0.39 | -0.6 |
4,510,821 | - | fecC | b4289 | 0.39 | -0.0 |
4,510,836 | + | fecC | b4289 | 0.40 | -0.1 |
4,510,836 | - | fecC | b4289 | 0.40 | -1.2 |
4,510,836 | - | fecC | b4289 | 0.40 | -0.5 |
4,510,852 | - | fecC | b4289 | 0.42 | +0.2 |
4,510,868 | + | fecC | b4289 | 0.43 | -0.7 |
4,510,979 | + | fecC | b4289 | 0.55 | -2.0 |
4,510,979 | + | fecC | b4289 | 0.55 | +0.4 |
4,511,022 | + | fecC | b4289 | 0.59 | -1.1 |
4,511,022 | + | fecC | b4289 | 0.59 | -1.5 |
4,511,080 | - | fecC | b4289 | 0.65 | -0.8 |
4,511,080 | - | fecC | b4289 | 0.65 | +1.0 |
4,511,081 | - | fecC | b4289 | 0.65 | -0.8 |
4,511,090 | + | fecC | b4289 | 0.66 | -0.3 |
4,511,121 | + | fecC | b4289 | 0.69 | -0.8 |
4,511,121 | + | fecC | b4289 | 0.69 | -1.4 |
4,511,153 | + | fecC | b4289 | 0.72 | -0.2 |
4,511,153 | + | fecC | b4289 | 0.72 | +0.1 |
4,511,153 | + | fecC | b4289 | 0.72 | -0.4 |
4,511,161 | - | fecC | b4289 | 0.73 | +0.0 |
4,511,192 | - | fecC | b4289 | 0.76 | -1.2 |
4,511,248 | - | fecC | b4289 | 0.81 | -0.6 |
4,511,270 | + | fecC | b4289 | 0.84 | -0.1 |
4,511,270 | + | fecC | b4289 | 0.84 | -0.6 |
4,511,290 | - | fecC | b4289 | 0.86 | -1.2 |
4,511,290 | - | fecC | b4289 | 0.86 | -1.3 |
4,511,293 | + | fecC | b4289 | 0.86 | -1.2 |
4,511,293 | + | fecC | b4289 | 0.86 | -1.1 |
4,511,339 | + | -0.5 | |||
4,511,403 | - | -0.0 | |||
4,511,405 | + | -1.1 | |||
4,511,406 | - | +0.5 | |||
4,511,460 | - | -0.1 | |||
4,511,523 | + | fecB | b4290 | 0.10 | -0.5 |
4,511,523 | + | fecB | b4290 | 0.10 | -0.7 |
4,511,526 | - | fecB | b4290 | 0.11 | -0.9 |
4,511,565 | + | fecB | b4290 | 0.15 | -0.0 |
4,511,570 | - | fecB | b4290 | 0.16 | -0.7 |
4,511,572 | - | fecB | b4290 | 0.16 | -2.6 |
4,511,595 | - | fecB | b4290 | 0.18 | -2.9 |
4,511,595 | - | fecB | b4290 | 0.18 | -0.3 |
4,511,604 | + | fecB | b4290 | 0.19 | -0.8 |
4,511,604 | + | fecB | b4290 | 0.19 | -0.5 |
4,511,604 | + | fecB | b4290 | 0.19 | +0.8 |
4,511,607 | - | fecB | b4290 | 0.20 | -0.8 |
4,511,607 | - | fecB | b4290 | 0.20 | -0.4 |
4,511,616 | + | fecB | b4290 | 0.21 | -0.8 |
4,511,622 | - | fecB | b4290 | 0.21 | +0.8 |
4,511,638 | - | fecB | b4290 | 0.23 | -0.8 |
4,511,638 | - | fecB | b4290 | 0.23 | -0.8 |
4,511,639 | - | fecB | b4290 | 0.23 | -0.8 |
4,511,639 | - | fecB | b4290 | 0.23 | -0.6 |
4,511,683 | + | fecB | b4290 | 0.28 | +0.3 |
4,511,683 | + | fecB | b4290 | 0.28 | -0.2 |
4,511,727 | - | fecB | b4290 | 0.33 | -0.6 |
4,511,727 | - | fecB | b4290 | 0.33 | -0.8 |
4,511,745 | + | -0.2 | |||
4,511,745 | + | fecB | b4290 | 0.35 | +0.1 |
4,511,811 | + | fecB | b4290 | 0.42 | +0.0 |
4,511,811 | + | fecB | b4290 | 0.42 | -1.8 |
4,511,824 | + | fecB | b4290 | 0.44 | +0.3 |
4,511,846 | - | fecB | b4290 | 0.46 | -0.6 |
4,511,988 | + | fecB | b4290 | 0.62 | -0.6 |
4,511,988 | + | fecB | b4290 | 0.62 | -1.6 |
4,512,019 | - | fecB | b4290 | 0.65 | +0.4 |
4,512,061 | - | fecB | b4290 | 0.70 | -0.1 |
4,512,095 | + | fecB | b4290 | 0.74 | -0.5 |
4,512,095 | + | fecB | b4290 | 0.74 | +0.6 |
4,512,096 | - | fecB | b4290 | 0.74 | -0.4 |
4,512,096 | - | fecB | b4290 | 0.74 | -2.7 |
4,512,119 | - | fecB | b4290 | 0.76 | -1.2 |
4,512,127 | + | fecB | b4290 | 0.77 | +0.4 |
4,512,127 | + | fecB | b4290 | 0.77 | +0.3 |
4,512,129 | - | fecB | b4290 | 0.78 | -1.9 |
4,512,145 | + | fecB | b4290 | 0.79 | +0.4 |
4,512,235 | + | fecB | b4290 | 0.89 | -0.1 |
4,512,235 | + | fecB | b4290 | 0.89 | +0.4 |
4,512,235 | + | fecB | b4290 | 0.89 | -0.5 |
4,512,235 | + | fecB | b4290 | 0.89 | +0.2 |
4,512,262 | - | +0.1 | |||
4,512,262 | - | +0.3 | |||
4,512,262 | - | +0.1 | |||
4,512,262 | - | -1.1 | |||
4,512,341 | - | -0.2 | |||
4,512,372 | - | +0.3 | |||
4,512,372 | - | +0.5 | |||
4,512,417 | + | +0.4 | |||
4,512,417 | + | +0.1 | |||
4,512,422 | + | -2.1 |
Or see this region's nucleotide sequence