Experiment: LB Aerobic with Zinc Pyrithione 0.0000025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ypdG and ypdH are separated by 21 nucleotides ypdH and glk are separated by 218 nucleotides
b2386: ypdG - predicted enzyme IIC component of PTS (NCBI), at 2,504,669 to 2,505,916
ypdG
b2387: ypdH - predicted enzyme IIB component of PTS (NCBI), at 2,505,938 to 2,506,264
ypdH
b2388: glk - glucokinase (NCBI), at 2,506,483 to 2,507,448
glk
Position (kb)
2505
2506
2507 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2504.967 kb on + strand, within ypdG at 2504.967 kb on + strand, within ypdG at 2505.076 kb on + strand, within ypdG at 2505.092 kb on - strand, within ypdG at 2505.107 kb on + strand, within ypdG at 2505.145 kb on - strand, within ypdG at 2505.243 kb on + strand, within ypdG at 2505.350 kb on - strand, within ypdG at 2505.408 kb on - strand, within ypdG at 2505.468 kb on - strand, within ypdG at 2505.473 kb on - strand, within ypdG at 2505.504 kb on - strand, within ypdG at 2505.639 kb on + strand, within ypdG at 2505.648 kb on - strand, within ypdG at 2505.648 kb on - strand, within ypdG at 2505.672 kb on + strand, within ypdG at 2505.719 kb on + strand, within ypdG at 2505.719 kb on + strand, within ypdG at 2505.787 kb on + strand, within ypdG at 2505.885 kb on - strand at 2505.919 kb on + strand at 2505.927 kb on - strand at 2505.927 kb on - strand at 2505.949 kb on + strand at 2505.954 kb on - strand at 2505.954 kb on - strand at 2506.086 kb on - strand, within ypdH at 2506.086 kb on - strand, within ypdH at 2506.096 kb on + strand, within ypdH at 2506.129 kb on - strand, within ypdH at 2506.201 kb on - strand, within ypdH at 2506.212 kb on - strand, within ypdH at 2506.219 kb on - strand, within ypdH at 2506.225 kb on - strand, within ypdH at 2506.225 kb on - strand, within ypdH at 2506.286 kb on + strand at 2506.294 kb on - strand at 2506.370 kb on + strand at 2506.386 kb on - strand at 2506.393 kb on + strand at 2506.393 kb on + strand at 2506.428 kb on + strand at 2506.578 kb on - strand at 2506.646 kb on - strand, within glk at 2506.646 kb on - strand, within glk at 2506.731 kb on - strand, within glk at 2506.731 kb on - strand, within glk at 2506.780 kb on - strand, within glk at 2506.800 kb on - strand, within glk at 2506.861 kb on - strand, within glk at 2506.866 kb on + strand, within glk at 2507.004 kb on + strand, within glk at 2507.004 kb on + strand, within glk at 2507.022 kb on + strand, within glk at 2507.057 kb on + strand, within glk at 2507.185 kb on + strand, within glk at 2507.215 kb on + strand, within glk
Per-strain Table
Position Strand Gene LocusTag Fraction LB Aerobic with Zinc Pyrithione 0.0000025 mM remove 2,504,967 + ypdG b2386 0.24 -1.3 2,504,967 + ypdG b2386 0.24 -0.4 2,505,076 + ypdG b2386 0.33 +0.3 2,505,092 - ypdG b2386 0.34 +0.7 2,505,107 + ypdG b2386 0.35 -0.9 2,505,145 - ypdG b2386 0.38 +0.7 2,505,243 + ypdG b2386 0.46 -0.1 2,505,350 - ypdG b2386 0.55 -0.0 2,505,408 - ypdG b2386 0.59 +0.3 2,505,468 - ypdG b2386 0.64 -0.1 2,505,473 - ypdG b2386 0.64 +0.1 2,505,504 - ypdG b2386 0.67 -0.1 2,505,639 + ypdG b2386 0.78 +0.6 2,505,648 - ypdG b2386 0.78 +0.3 2,505,648 - ypdG b2386 0.78 +0.3 2,505,672 + ypdG b2386 0.80 +1.0 2,505,719 + ypdG b2386 0.84 -0.3 2,505,719 + ypdG b2386 0.84 -0.7 2,505,787 + ypdG b2386 0.90 +0.3 2,505,885 - -0.9 2,505,919 + +0.3 2,505,927 - +0.7 2,505,927 - +0.7 2,505,949 + -0.0 2,505,954 - -0.0 2,505,954 - +0.7 2,506,086 - ypdH b2387 0.45 +0.2 2,506,086 - ypdH b2387 0.45 -0.9 2,506,096 + ypdH b2387 0.48 +0.2 2,506,129 - ypdH b2387 0.58 +1.0 2,506,201 - ypdH b2387 0.80 +0.9 2,506,212 - ypdH b2387 0.84 +0.8 2,506,219 - ypdH b2387 0.86 +1.0 2,506,225 - ypdH b2387 0.88 +1.3 2,506,225 - ypdH b2387 0.88 +0.4 2,506,286 + -0.3 2,506,294 - +1.8 2,506,370 + -0.9 2,506,386 - +0.6 2,506,393 + +1.0 2,506,393 + +0.6 2,506,428 + +0.7 2,506,578 - -1.2 2,506,646 - glk b2388 0.17 -1.8 2,506,646 - glk b2388 0.17 -0.1 2,506,731 - glk b2388 0.26 -0.3 2,506,731 - glk b2388 0.26 -0.5 2,506,780 - glk b2388 0.31 -1.4 2,506,800 - glk b2388 0.33 -0.4 2,506,861 - glk b2388 0.39 -1.1 2,506,866 + glk b2388 0.40 -2.8 2,507,004 + glk b2388 0.54 -0.4 2,507,004 + glk b2388 0.54 -0.5 2,507,022 + glk b2388 0.56 -0.0 2,507,057 + glk b2388 0.59 -0.3 2,507,185 + glk b2388 0.73 +0.1 2,507,215 + glk b2388 0.76 -0.5
Or see this region's nucleotide sequence