Strain Fitness in Escherichia coli BW25113 around b1557

Experiment: LB Aerobic with Zinc Pyrithione 0.0000025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydfR and b1556 are separated by 4 nucleotidesb1556 and cspB are separated by 753 nucleotidescspB and cspF are separated by 300 nucleotidescspF and b1559 are separated by 421 nucleotides b1555: ydfR - Qin prophage; predicted protein (NCBI), at 1,638,078 to 1,638,389 ydfR b1556: b1556 - orf, hypothetical protein (VIMSS), at 1,638,394 to 1,638,609 b1556 b1557: cspB - Qin prophage; cold shock protein (NCBI), at 1,639,363 to 1,639,578 cspB b1558: cspF - Qin prophage; cold shock protein (NCBI), at 1,639,879 to 1,640,091 cspF b1559: b1559 - orf, hypothetical protein (VIMSS), at 1,640,513 to 1,641,265 b1559 Position (kb) 1639 1640Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1638.405 kb on - strandat 1638.405 kb on - strandat 1638.487 kb on - strand, within b1556at 1638.489 kb on - strand, within b1556at 1638.489 kb on - strand, within b1556at 1638.489 kb on - strand, within b1556at 1638.495 kb on + strand, within b1556at 1638.498 kb on - strand, within b1556at 1638.513 kb on + strand, within b1556at 1638.624 kb on + strandat 1638.624 kb on + strandat 1638.644 kb on - strandat 1638.653 kb on + strandat 1638.653 kb on + strandat 1638.658 kb on + strandat 1638.667 kb on + strandat 1638.667 kb on + strandat 1638.795 kb on + strandat 1638.800 kb on + strandat 1638.940 kb on + strandat 1638.988 kb on + strandat 1638.988 kb on + strandat 1638.988 kb on + strandat 1639.143 kb on - strandat 1639.143 kb on - strandat 1639.246 kb on - strandat 1639.298 kb on - strandat 1639.406 kb on - strand, within cspBat 1639.406 kb on - strand, within cspBat 1639.421 kb on - strand, within cspBat 1639.632 kb on - strandat 1639.632 kb on - strandat 1639.733 kb on - strandat 1639.753 kb on - strandat 1639.797 kb on + strandat 1639.806 kb on - strandat 1639.834 kb on - strandat 1640.045 kb on + strand, within cspFat 1640.045 kb on + strand, within cspFat 1640.069 kb on - strand, within cspFat 1640.110 kb on + strandat 1640.118 kb on - strandat 1640.124 kb on + strandat 1640.128 kb on + strandat 1640.132 kb on - strandat 1640.132 kb on - strandat 1640.132 kb on - strandat 1640.203 kb on + strandat 1640.204 kb on - strandat 1640.204 kb on - strandat 1640.204 kb on - strandat 1640.265 kb on + strandat 1640.350 kb on + strandat 1640.365 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Zinc Pyrithione 0.0000025 mM
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1,638,405 - +1.0
1,638,405 - -1.6
1,638,487 - b1556 b1556 0.43 +1.5
1,638,489 - b1556 b1556 0.44 -1.0
1,638,489 - b1556 b1556 0.44 +3.2
1,638,489 - b1556 b1556 0.44 +0.8
1,638,495 + b1556 b1556 0.47 +0.0
1,638,498 - b1556 b1556 0.48 -1.0
1,638,513 + b1556 b1556 0.55 +1.0
1,638,624 + +0.0
1,638,624 + +2.4
1,638,644 - +0.0
1,638,653 + -3.0
1,638,653 + +0.5
1,638,658 + -1.0
1,638,667 + +0.0
1,638,667 + -1.0
1,638,795 + +0.0
1,638,800 + +0.0
1,638,940 + +0.0
1,638,988 + +0.0
1,638,988 + +0.0
1,638,988 + +0.0
1,639,143 - -0.7
1,639,143 - -0.6
1,639,246 - +0.0
1,639,298 - -0.1
1,639,406 - cspB b1557 0.20 +0.0
1,639,406 - cspB b1557 0.20 +2.2
1,639,421 - cspB b1557 0.27 +1.6
1,639,632 - -0.2
1,639,632 - -0.2
1,639,733 - +0.3
1,639,753 - +0.0
1,639,797 + +0.0
1,639,806 - +0.0
1,639,834 - +0.0
1,640,045 + cspF b1558 0.78 +0.5
1,640,045 + cspF b1558 0.78 +1.1
1,640,069 - cspF b1558 0.89 +0.0
1,640,110 + +1.5
1,640,118 - +0.0
1,640,124 + +0.5
1,640,128 + +0.3
1,640,132 - +0.4
1,640,132 - +1.6
1,640,132 - +0.3
1,640,203 + +0.5
1,640,204 - +0.0
1,640,204 - -1.0
1,640,204 - +0.0
1,640,265 + -2.6
1,640,350 + -1.0
1,640,365 - +0.0

Or see this region's nucleotide sequence