Strain Fitness in Escherichia coli BW25113 around b4350

Experiment: LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthsdM and hsdR are separated by 200 nucleotideshsdR and mrr are separated by 187 nucleotides b4349: hsdM - DNA methylase M (NCBI), at 4,579,482 to 4,581,071 hsdM b4350: hsdR - endonuclease R (RefSeq), at 4,581,272 to 4,584,784 hsdR b4351: mrr - methylated adenine and cytosine restriction protein (NCBI), at 4,584,972 to 4,585,886 mrr Position (kb) 4581 4582 4583 4584 4585Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4580.364 kb on + strand, within hsdMat 4580.504 kb on + strand, within hsdMat 4580.622 kb on - strand, within hsdMat 4580.622 kb on - strand, within hsdMat 4580.625 kb on + strand, within hsdMat 4580.719 kb on + strand, within hsdMat 4580.727 kb on - strand, within hsdMat 4580.787 kb on - strand, within hsdMat 4580.873 kb on + strand, within hsdMat 4580.873 kb on + strand, within hsdMat 4580.899 kb on - strand, within hsdMat 4580.899 kb on - strand, within hsdMat 4580.900 kb on + strand, within hsdMat 4580.900 kb on + strand, within hsdMat 4580.925 kb on + strandat 4580.925 kb on + strandat 4581.069 kb on - strandat 4581.102 kb on + strandat 4581.147 kb on - strandat 4581.188 kb on + strandat 4581.188 kb on + strandat 4581.198 kb on + strandat 4581.206 kb on - strandat 4581.229 kb on - strandat 4581.229 kb on - strandat 4581.261 kb on + strandat 4581.269 kb on - strandat 4581.269 kb on - strandat 4581.269 kb on - strandat 4581.270 kb on + strandat 4581.283 kb on - strandat 4581.308 kb on + strandat 4581.412 kb on - strandat 4581.412 kb on - strandat 4581.480 kb on + strandat 4581.488 kb on - strandat 4581.541 kb on + strandat 4581.652 kb on + strand, within hsdRat 4581.652 kb on + strand, within hsdRat 4581.667 kb on + strand, within hsdRat 4581.667 kb on + strand, within hsdRat 4581.678 kb on - strand, within hsdRat 4581.695 kb on + strand, within hsdRat 4581.707 kb on + strand, within hsdRat 4581.734 kb on + strand, within hsdRat 4581.963 kb on + strand, within hsdRat 4581.963 kb on + strand, within hsdRat 4582.023 kb on - strand, within hsdRat 4582.052 kb on - strand, within hsdRat 4582.175 kb on + strand, within hsdRat 4582.204 kb on + strand, within hsdRat 4582.210 kb on + strand, within hsdRat 4582.293 kb on - strand, within hsdRat 4582.310 kb on + strand, within hsdRat 4582.310 kb on + strand, within hsdRat 4582.310 kb on + strand, within hsdRat 4582.334 kb on - strand, within hsdRat 4582.340 kb on + strand, within hsdRat 4582.340 kb on + strand, within hsdRat 4582.354 kb on + strand, within hsdRat 4582.392 kb on + strand, within hsdRat 4582.392 kb on + strand, within hsdRat 4582.414 kb on + strand, within hsdRat 4582.419 kb on + strand, within hsdRat 4582.427 kb on - strand, within hsdRat 4582.427 kb on - strand, within hsdRat 4582.496 kb on + strand, within hsdRat 4582.496 kb on + strand, within hsdRat 4582.676 kb on + strand, within hsdRat 4582.736 kb on - strand, within hsdRat 4582.736 kb on - strand, within hsdRat 4582.804 kb on - strand, within hsdRat 4582.861 kb on - strand, within hsdRat 4582.866 kb on + strand, within hsdRat 4582.875 kb on + strand, within hsdRat 4582.875 kb on + strand, within hsdRat 4582.908 kb on + strand, within hsdRat 4582.919 kb on - strand, within hsdRat 4582.958 kb on - strand, within hsdRat 4583.134 kb on - strand, within hsdRat 4583.352 kb on - strand, within hsdRat 4583.452 kb on + strand, within hsdRat 4583.453 kb on + strand, within hsdRat 4583.460 kb on - strand, within hsdRat 4583.460 kb on - strand, within hsdRat 4583.460 kb on - strand, within hsdRat 4583.474 kb on - strand, within hsdRat 4583.474 kb on - strand, within hsdRat 4583.475 kb on - strand, within hsdRat 4583.538 kb on + strand, within hsdRat 4583.674 kb on + strand, within hsdRat 4583.711 kb on + strand, within hsdRat 4583.713 kb on - strand, within hsdRat 4583.713 kb on - strand, within hsdRat 4583.803 kb on - strand, within hsdRat 4583.813 kb on + strand, within hsdRat 4583.865 kb on + strand, within hsdRat 4583.908 kb on - strand, within hsdRat 4583.908 kb on - strand, within hsdRat 4583.913 kb on - strand, within hsdRat 4583.913 kb on - strand, within hsdRat 4583.940 kb on + strand, within hsdRat 4584.058 kb on - strand, within hsdRat 4584.058 kb on - strand, within hsdRat 4584.114 kb on + strand, within hsdRat 4584.197 kb on + strand, within hsdRat 4584.238 kb on + strand, within hsdRat 4584.324 kb on + strand, within hsdRat 4584.327 kb on - strand, within hsdRat 4584.327 kb on - strand, within hsdRat 4584.331 kb on + strand, within hsdRat 4584.331 kb on + strand, within hsdRat 4584.386 kb on - strand, within hsdRat 4584.404 kb on + strand, within hsdRat 4584.457 kb on - strandat 4584.497 kb on + strandat 4584.497 kb on + strandat 4584.497 kb on + strandat 4584.505 kb on - strandat 4584.505 kb on - strandat 4584.519 kb on - strandat 4584.519 kb on - strandat 4584.538 kb on + strandat 4584.684 kb on + strandat 4584.687 kb on - strandat 4584.692 kb on - strandat 4584.742 kb on - strandat 4584.776 kb on + strandat 4584.778 kb on + strandat 4584.793 kb on + strandat 4584.793 kb on + strandat 4584.801 kb on - strandat 4584.803 kb on + strandat 4584.828 kb on + strandat 4584.897 kb on + strandat 4584.924 kb on + strandat 4584.932 kb on - strandat 4584.949 kb on + strandat 4584.957 kb on + strandat 4584.965 kb on + strandat 4584.965 kb on - strandat 4584.965 kb on - strandat 4584.976 kb on - strandat 4584.976 kb on - strandat 4585.032 kb on + strandat 4585.047 kb on - strandat 4585.047 kb on - strandat 4585.071 kb on - strand, within mrrat 4585.153 kb on + strand, within mrrat 4585.155 kb on + strand, within mrrat 4585.266 kb on + strand, within mrrat 4585.281 kb on + strand, within mrrat 4585.357 kb on + strand, within mrrat 4585.357 kb on + strand, within mrrat 4585.390 kb on - strand, within mrrat 4585.398 kb on + strand, within mrrat 4585.447 kb on - strand, within mrrat 4585.500 kb on + strand, within mrrat 4585.513 kb on + strand, within mrrat 4585.549 kb on + strand, within mrrat 4585.549 kb on + strand, within mrrat 4585.557 kb on - strand, within mrrat 4585.616 kb on + strand, within mrrat 4585.616 kb on + strand, within mrrat 4585.647 kb on + strand, within mrrat 4585.647 kb on + strand, within mrrat 4585.647 kb on + strand, within mrrat 4585.662 kb on + strand, within mrrat 4585.683 kb on + strand, within mrrat 4585.746 kb on - strand, within mrrat 4585.775 kb on - strand, within mrrat 4585.775 kb on - strand, within mrrat 4585.780 kb on - strand, within mrr

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
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4,580,364 + hsdM b4349 0.55 +0.7
4,580,504 + hsdM b4349 0.64 +0.6
4,580,622 - hsdM b4349 0.72 +0.1
4,580,622 - hsdM b4349 0.72 +1.6
4,580,625 + hsdM b4349 0.72 +0.6
4,580,719 + hsdM b4349 0.78 +0.4
4,580,727 - hsdM b4349 0.78 -0.0
4,580,787 - hsdM b4349 0.82 +0.2
4,580,873 + hsdM b4349 0.87 -1.0
4,580,873 + hsdM b4349 0.87 -1.0
4,580,899 - hsdM b4349 0.89 -2.4
4,580,899 - hsdM b4349 0.89 +0.9
4,580,900 + hsdM b4349 0.89 -0.7
4,580,900 + hsdM b4349 0.89 -1.5
4,580,925 + -0.1
4,580,925 + +0.3
4,581,069 - +1.6
4,581,102 + +0.8
4,581,147 - -2.7
4,581,188 + -0.4
4,581,188 + +0.6
4,581,198 + -0.3
4,581,206 - +2.4
4,581,229 - -1.0
4,581,229 - -0.7
4,581,261 + +1.0
4,581,269 - -2.2
4,581,269 - -1.9
4,581,269 - -1.6
4,581,270 + -1.9
4,581,283 - -0.7
4,581,308 + +1.1
4,581,412 - -1.3
4,581,412 - -0.8
4,581,480 + +1.2
4,581,488 - +0.9
4,581,541 + +0.7
4,581,652 + hsdR b4350 0.11 -0.3
4,581,652 + hsdR b4350 0.11 -1.5
4,581,667 + hsdR b4350 0.11 -0.5
4,581,667 + hsdR b4350 0.11 +1.0
4,581,678 - hsdR b4350 0.12 +0.7
4,581,695 + hsdR b4350 0.12 -2.3
4,581,707 + hsdR b4350 0.12 -0.5
4,581,734 + hsdR b4350 0.13 +0.9
4,581,963 + hsdR b4350 0.20 +1.3
4,581,963 + hsdR b4350 0.20 +1.6
4,582,023 - hsdR b4350 0.21 +1.4
4,582,052 - hsdR b4350 0.22 +0.9
4,582,175 + hsdR b4350 0.26 -1.2
4,582,204 + hsdR b4350 0.27 -2.0
4,582,210 + hsdR b4350 0.27 -0.0
4,582,293 - hsdR b4350 0.29 +0.4
4,582,310 + hsdR b4350 0.30 -0.2
4,582,310 + hsdR b4350 0.30 +1.0
4,582,310 + hsdR b4350 0.30 +1.6
4,582,334 - hsdR b4350 0.30 -1.8
4,582,340 + hsdR b4350 0.30 -1.9
4,582,340 + hsdR b4350 0.30 -0.7
4,582,354 + hsdR b4350 0.31 -0.6
4,582,392 + hsdR b4350 0.32 -1.5
4,582,392 + hsdR b4350 0.32 +0.6
4,582,414 + hsdR b4350 0.33 +1.3
4,582,419 + hsdR b4350 0.33 +0.8
4,582,427 - hsdR b4350 0.33 +1.3
4,582,427 - hsdR b4350 0.33 +3.0
4,582,496 + hsdR b4350 0.35 +0.7
4,582,496 + hsdR b4350 0.35 +1.7
4,582,676 + hsdR b4350 0.40 -0.0
4,582,736 - hsdR b4350 0.42 -1.4
4,582,736 - hsdR b4350 0.42 +1.3
4,582,804 - hsdR b4350 0.44 -1.4
4,582,861 - hsdR b4350 0.45 -2.5
4,582,866 + hsdR b4350 0.45 +0.3
4,582,875 + hsdR b4350 0.46 +1.0
4,582,875 + hsdR b4350 0.46 +1.9
4,582,908 + hsdR b4350 0.47 +1.9
4,582,919 - hsdR b4350 0.47 -0.7
4,582,958 - hsdR b4350 0.48 -0.8
4,583,134 - hsdR b4350 0.53 +1.9
4,583,352 - hsdR b4350 0.59 +1.1
4,583,452 + hsdR b4350 0.62 -0.6
4,583,453 + hsdR b4350 0.62 -0.1
4,583,460 - hsdR b4350 0.62 +0.4
4,583,460 - hsdR b4350 0.62 -2.4
4,583,460 - hsdR b4350 0.62 +2.5
4,583,474 - hsdR b4350 0.63 +1.2
4,583,474 - hsdR b4350 0.63 -0.9
4,583,475 - hsdR b4350 0.63 -1.2
4,583,538 + hsdR b4350 0.65 -0.4
4,583,674 + hsdR b4350 0.68 -3.7
4,583,711 + hsdR b4350 0.69 +0.3
4,583,713 - hsdR b4350 0.69 -2.4
4,583,713 - hsdR b4350 0.69 -0.9
4,583,803 - hsdR b4350 0.72 +0.2
4,583,813 + hsdR b4350 0.72 +0.5
4,583,865 + hsdR b4350 0.74 +1.6
4,583,908 - hsdR b4350 0.75 +0.6
4,583,908 - hsdR b4350 0.75 +1.0
4,583,913 - hsdR b4350 0.75 -0.0
4,583,913 - hsdR b4350 0.75 +0.4
4,583,940 + hsdR b4350 0.76 -0.4
4,584,058 - hsdR b4350 0.79 +3.3
4,584,058 - hsdR b4350 0.79 +3.0
4,584,114 + hsdR b4350 0.81 +2.9
4,584,197 + hsdR b4350 0.83 +0.1
4,584,238 + hsdR b4350 0.84 -0.4
4,584,324 + hsdR b4350 0.87 +1.2
4,584,327 - hsdR b4350 0.87 +2.5
4,584,327 - hsdR b4350 0.87 +1.4
4,584,331 + hsdR b4350 0.87 +0.8
4,584,331 + hsdR b4350 0.87 -0.3
4,584,386 - hsdR b4350 0.89 +1.2
4,584,404 + hsdR b4350 0.89 +0.6
4,584,457 - -2.7
4,584,497 + -2.4
4,584,497 + -2.0
4,584,497 + +0.4
4,584,505 - -1.9
4,584,505 - -1.3
4,584,519 - -0.3
4,584,519 - +0.6
4,584,538 + +0.5
4,584,684 + +0.4
4,584,687 - -0.7
4,584,692 - -0.3
4,584,742 - -1.9
4,584,776 + -0.2
4,584,778 + -0.7
4,584,793 + +1.9
4,584,793 + +1.9
4,584,801 - +1.0
4,584,803 + +0.9
4,584,828 + +1.9
4,584,897 + +0.2
4,584,924 + +1.1
4,584,932 - +0.2
4,584,949 + +0.1
4,584,957 + +0.6
4,584,965 + +0.6
4,584,965 - -0.7
4,584,965 - -0.3
4,584,976 - -0.3
4,584,976 - -0.1
4,585,032 + -0.4
4,585,047 - -1.5
4,585,047 - +1.8
4,585,071 - mrr b4351 0.11 -3.4
4,585,153 + mrr b4351 0.20 -1.0
4,585,155 + mrr b4351 0.20 +0.7
4,585,266 + mrr b4351 0.32 -0.9
4,585,281 + mrr b4351 0.34 +1.7
4,585,357 + mrr b4351 0.42 -0.8
4,585,357 + mrr b4351 0.42 +0.5
4,585,390 - mrr b4351 0.46 +0.6
4,585,398 + mrr b4351 0.47 +1.0
4,585,447 - mrr b4351 0.52 -1.2
4,585,500 + mrr b4351 0.58 +1.9
4,585,513 + mrr b4351 0.59 +1.6
4,585,549 + mrr b4351 0.63 +2.0
4,585,549 + mrr b4351 0.63 -2.0
4,585,557 - mrr b4351 0.64 +0.3
4,585,616 + mrr b4351 0.70 -3.0
4,585,616 + mrr b4351 0.70 +0.4
4,585,647 + mrr b4351 0.74 -0.3
4,585,647 + mrr b4351 0.74 -0.3
4,585,647 + mrr b4351 0.74 +2.0
4,585,662 + mrr b4351 0.75 -0.4
4,585,683 + mrr b4351 0.78 -1.0
4,585,746 - mrr b4351 0.85 -1.2
4,585,775 - mrr b4351 0.88 -2.0
4,585,775 - mrr b4351 0.88 -0.3
4,585,780 - mrr b4351 0.88 -0.4

Or see this region's nucleotide sequence