Strain Fitness in Escherichia coli BW25113 around b4143

Experiment: LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjeH and groS are separated by 275 nucleotidesgroS and GroEL are separated by 43 nucleotidesGroEL and yjeI are separated by 137 nucleotidesyjeI and yjeJ are separated by 202 nucleotides b4141: yjeH - predicted transporter (NCBI), at 4,367,179 to 4,368,435 yjeH b4142: groS - co-chaperonin GroES (NCBI), at 4,368,711 to 4,369,004 groS b4143: GroEL - chaperonin GroEL (NCBI), at 4,369,048 to 4,370,694 GroEL b4144: yjeI - orf, hypothetical protein (VIMSS), at 4,370,832 to 4,371,185 yjeI b4145: yjeJ - hypothetical protein (NCBI), at 4,371,388 to 4,372,257 yjeJ Position (kb) 4369 4370 4371Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4368.064 kb on + strand, within yjeHat 4368.100 kb on - strand, within yjeHat 4368.169 kb on + strand, within yjeHat 4368.235 kb on - strand, within yjeHat 4368.312 kb on - strandat 4368.316 kb on + strandat 4368.388 kb on - strandat 4368.402 kb on + strandat 4368.402 kb on + strandat 4368.547 kb on + strandat 4368.600 kb on + strandat 4368.608 kb on - strandat 4368.999 kb on + strandat 4369.015 kb on + strandat 4369.015 kb on + strandat 4369.037 kb on + strandat 4370.697 kb on + strandat 4370.697 kb on + strandat 4370.705 kb on - strandat 4370.707 kb on + strandat 4370.707 kb on + strandat 4370.868 kb on + strand, within yjeIat 4370.873 kb on + strand, within yjeIat 4370.974 kb on - strand, within yjeIat 4371.100 kb on + strand, within yjeIat 4371.165 kb on + strandat 4371.173 kb on - strandat 4371.198 kb on - strandat 4371.198 kb on - strandat 4371.247 kb on + strandat 4371.247 kb on + strandat 4371.254 kb on + strandat 4371.366 kb on - strandat 4371.366 kb on - strandat 4371.379 kb on - strandat 4371.418 kb on + strandat 4371.441 kb on - strandat 4371.441 kb on - strandat 4371.441 kb on - strandat 4371.456 kb on + strandat 4371.456 kb on + strandat 4371.465 kb on - strandat 4371.484 kb on + strand, within yjeJat 4371.494 kb on + strand, within yjeJat 4371.501 kb on + strand, within yjeJat 4371.505 kb on + strand, within yjeJat 4371.505 kb on + strand, within yjeJat 4371.517 kb on - strand, within yjeJat 4371.517 kb on - strand, within yjeJat 4371.522 kb on - strand, within yjeJat 4371.573 kb on + strand, within yjeJat 4371.599 kb on - strand, within yjeJat 4371.599 kb on - strand, within yjeJat 4371.612 kb on + strand, within yjeJat 4371.620 kb on - strand, within yjeJat 4371.620 kb on - strand, within yjeJat 4371.656 kb on + strand, within yjeJat 4371.656 kb on + strand, within yjeJat 4371.670 kb on - strand, within yjeJat 4371.694 kb on + strand, within yjeJat 4371.694 kb on + strand, within yjeJ

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
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4,368,064 + yjeH b4141 0.70 +0.2
4,368,100 - yjeH b4141 0.73 +1.1
4,368,169 + yjeH b4141 0.79 -1.4
4,368,235 - yjeH b4141 0.84 -0.4
4,368,312 - -0.1
4,368,316 + +0.4
4,368,388 - +1.1
4,368,402 + -1.8
4,368,402 + +0.1
4,368,547 + -1.7
4,368,600 + -2.8
4,368,608 - +1.3
4,368,999 + +1.1
4,369,015 + -1.3
4,369,015 + -0.5
4,369,037 + -1.8
4,370,697 + +0.2
4,370,697 + +0.3
4,370,705 - +1.3
4,370,707 + -1.8
4,370,707 + -0.3
4,370,868 + yjeI b4144 0.10 +0.3
4,370,873 + yjeI b4144 0.12 +0.9
4,370,974 - yjeI b4144 0.40 -2.1
4,371,100 + yjeI b4144 0.76 +2.6
4,371,165 + -0.3
4,371,173 - +1.8
4,371,198 - -0.3
4,371,198 - -1.0
4,371,247 + -0.6
4,371,247 + +0.7
4,371,254 + -0.7
4,371,366 - -2.1
4,371,366 - +2.5
4,371,379 - +0.2
4,371,418 + +0.7
4,371,441 - +1.3
4,371,441 - +1.7
4,371,441 - -0.8
4,371,456 + +0.1
4,371,456 + -0.5
4,371,465 - +1.2
4,371,484 + yjeJ b4145 0.11 -1.0
4,371,494 + yjeJ b4145 0.12 +0.6
4,371,501 + yjeJ b4145 0.13 +0.2
4,371,505 + yjeJ b4145 0.13 +2.1
4,371,505 + yjeJ b4145 0.13 -2.4
4,371,517 - yjeJ b4145 0.15 -0.4
4,371,517 - yjeJ b4145 0.15 -0.7
4,371,522 - yjeJ b4145 0.15 +1.9
4,371,573 + yjeJ b4145 0.21 +1.5
4,371,599 - yjeJ b4145 0.24 -0.5
4,371,599 - yjeJ b4145 0.24 -0.7
4,371,612 + yjeJ b4145 0.26 +0.8
4,371,620 - yjeJ b4145 0.27 +0.5
4,371,620 - yjeJ b4145 0.27 -0.3
4,371,656 + yjeJ b4145 0.31 -0.1
4,371,656 + yjeJ b4145 0.31 -0.9
4,371,670 - yjeJ b4145 0.32 -1.6
4,371,694 + yjeJ b4145 0.35 -0.4
4,371,694 + yjeJ b4145 0.35 +0.3

Or see this region's nucleotide sequence