Strain Fitness in Escherichia coli BW25113 around b3152

Experiment: LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyraQ and yraR are separated by 72 nucleotidesyraR and yhbO are separated by 127 nucleotidesyhbO and yhbP overlap by 21 nucleotides b3151: yraQ - predicted permease (NCBI), at 3,295,120 to 3,296,160 yraQ b3152: yraR - orf, hypothetical protein (VIMSS), at 3,296,233 to 3,296,868 yraR b3153: yhbO - orf, hypothetical protein (VIMSS), at 3,296,996 to 3,297,514 yhbO b3154: yhbP - hypothetical protein (NCBI), at 3,297,494 to 3,297,937 yhbP Position (kb) 3296 3297Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3295.249 kb on - strand, within yraQat 3295.288 kb on + strand, within yraQat 3295.350 kb on - strand, within yraQat 3295.350 kb on - strand, within yraQat 3295.384 kb on + strand, within yraQat 3295.392 kb on - strand, within yraQat 3295.394 kb on + strand, within yraQat 3295.443 kb on + strand, within yraQat 3295.443 kb on + strand, within yraQat 3295.451 kb on - strand, within yraQat 3295.461 kb on - strand, within yraQat 3295.559 kb on - strand, within yraQat 3295.559 kb on - strand, within yraQat 3295.618 kb on - strand, within yraQat 3295.633 kb on - strand, within yraQat 3295.690 kb on + strand, within yraQat 3295.791 kb on - strand, within yraQat 3295.791 kb on - strand, within yraQat 3295.824 kb on - strand, within yraQat 3295.850 kb on + strand, within yraQat 3295.911 kb on - strand, within yraQat 3295.915 kb on - strand, within yraQat 3296.007 kb on + strand, within yraQat 3296.053 kb on - strand, within yraQat 3296.053 kb on - strand, within yraQat 3296.059 kb on - strandat 3296.059 kb on - strandat 3296.196 kb on + strandat 3296.201 kb on + strandat 3296.201 kb on + strandat 3296.221 kb on - strandat 3296.221 kb on - strandat 3296.289 kb on - strandat 3296.289 kb on - strandat 3296.294 kb on - strandat 3296.441 kb on - strand, within yraRat 3296.441 kb on - strand, within yraRat 3296.466 kb on - strand, within yraRat 3296.549 kb on + strand, within yraRat 3296.661 kb on + strand, within yraRat 3296.661 kb on + strand, within yraRat 3296.687 kb on - strand, within yraRat 3296.737 kb on - strand, within yraRat 3296.737 kb on - strand, within yraRat 3296.819 kb on + strandat 3296.819 kb on + strandat 3296.830 kb on + strandat 3296.927 kb on - strandat 3296.992 kb on + strandat 3296.992 kb on + strandat 3297.032 kb on - strandat 3297.149 kb on - strand, within yhbOat 3297.149 kb on - strand, within yhbOat 3297.295 kb on - strand, within yhbOat 3297.383 kb on - strand, within yhbOat 3297.383 kb on - strand, within yhbOat 3297.383 kb on - strand, within yhbOat 3297.395 kb on - strand, within yhbOat 3297.395 kb on - strand, within yhbOat 3297.432 kb on + strand, within yhbOat 3297.491 kb on + strandat 3297.491 kb on + strandat 3297.515 kb on - strandat 3297.553 kb on - strand, within yhbPat 3297.632 kb on + strand, within yhbPat 3297.632 kb on + strand, within yhbPat 3297.639 kb on + strand, within yhbPat 3297.667 kb on + strand, within yhbPat 3297.740 kb on - strand, within yhbPat 3297.740 kb on - strand, within yhbPat 3297.770 kb on + strand, within yhbPat 3297.842 kb on + strand, within yhbPat 3297.852 kb on + strand, within yhbPat 3297.857 kb on + strand, within yhbP

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
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3,295,249 - yraQ b3151 0.12 +1.1
3,295,288 + yraQ b3151 0.16 +0.9
3,295,350 - yraQ b3151 0.22 +1.3
3,295,350 - yraQ b3151 0.22 +2.3
3,295,384 + yraQ b3151 0.25 +0.5
3,295,392 - yraQ b3151 0.26 -2.3
3,295,394 + yraQ b3151 0.26 -0.6
3,295,443 + yraQ b3151 0.31 +0.0
3,295,443 + yraQ b3151 0.31 +0.8
3,295,451 - yraQ b3151 0.32 -1.9
3,295,461 - yraQ b3151 0.33 +0.0
3,295,559 - yraQ b3151 0.42 -1.1
3,295,559 - yraQ b3151 0.42 +1.9
3,295,618 - yraQ b3151 0.48 +1.5
3,295,633 - yraQ b3151 0.49 +2.4
3,295,690 + yraQ b3151 0.55 -3.7
3,295,791 - yraQ b3151 0.64 -0.1
3,295,791 - yraQ b3151 0.64 +1.3
3,295,824 - yraQ b3151 0.68 -1.1
3,295,850 + yraQ b3151 0.70 -0.1
3,295,911 - yraQ b3151 0.76 +0.4
3,295,915 - yraQ b3151 0.76 +0.8
3,296,007 + yraQ b3151 0.85 -3.6
3,296,053 - yraQ b3151 0.90 -1.7
3,296,053 - yraQ b3151 0.90 -1.2
3,296,059 - -0.3
3,296,059 - +0.3
3,296,196 + +0.2
3,296,201 + -0.1
3,296,201 + +2.8
3,296,221 - -0.2
3,296,221 - -0.1
3,296,289 - -1.6
3,296,289 - +1.7
3,296,294 - -0.6
3,296,441 - yraR b3152 0.33 -0.1
3,296,441 - yraR b3152 0.33 -0.5
3,296,466 - yraR b3152 0.37 +0.4
3,296,549 + yraR b3152 0.50 -0.6
3,296,661 + yraR b3152 0.67 -0.3
3,296,661 + yraR b3152 0.67 -0.2
3,296,687 - yraR b3152 0.71 +0.8
3,296,737 - yraR b3152 0.79 -1.3
3,296,737 - yraR b3152 0.79 -0.4
3,296,819 + +1.0
3,296,819 + -2.3
3,296,830 + +0.9
3,296,927 - -0.3
3,296,992 + +1.1
3,296,992 + -1.1
3,297,032 - +0.6
3,297,149 - yhbO b3153 0.29 +0.7
3,297,149 - yhbO b3153 0.29 +1.8
3,297,295 - yhbO b3153 0.58 +0.1
3,297,383 - yhbO b3153 0.75 +0.2
3,297,383 - yhbO b3153 0.75 +1.2
3,297,383 - yhbO b3153 0.75 +0.7
3,297,395 - yhbO b3153 0.77 +0.5
3,297,395 - yhbO b3153 0.77 +0.9
3,297,432 + yhbO b3153 0.84 +1.7
3,297,491 + +0.2
3,297,491 + +0.3
3,297,515 - +0.2
3,297,553 - yhbP b3154 0.13 +1.3
3,297,632 + yhbP b3154 0.31 -1.1
3,297,632 + yhbP b3154 0.31 +1.4
3,297,639 + yhbP b3154 0.33 -0.5
3,297,667 + yhbP b3154 0.39 +0.1
3,297,740 - yhbP b3154 0.55 -2.2
3,297,740 - yhbP b3154 0.55 +1.8
3,297,770 + yhbP b3154 0.62 +1.2
3,297,842 + yhbP b3154 0.78 +0.8
3,297,852 + yhbP b3154 0.81 -0.1
3,297,857 + yhbP b3154 0.82 +2.3

Or see this region's nucleotide sequence