Strain Fitness in Escherichia coli BW25113 around b2176

Experiment: LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntspr and rtn are separated by 180 nucleotidesrtn and yejA are separated by 81 nucleotides b2175: spr - predicted peptidase, outer membrane lipoprotein (NCBI), at 2,268,001 to 2,268,567 spr b2176: rtn - hypothetical protein (NCBI), at 2,268,748 to 2,270,304 rtn b2177: yejA - orf, hypothetical protein (VIMSS), at 2,270,386 to 2,272,200 yejA Position (kb) 2268 2269 2270 2271Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2267.793 kb on - strandat 2267.806 kb on - strandat 2267.817 kb on + strandat 2267.819 kb on - strandat 2267.853 kb on + strandat 2268.026 kb on + strandat 2268.026 kb on + strandat 2268.056 kb on + strandat 2268.058 kb on - strand, within sprat 2268.072 kb on - strand, within sprat 2268.142 kb on - strand, within sprat 2268.216 kb on + strand, within sprat 2268.216 kb on + strand, within sprat 2268.216 kb on + strand, within sprat 2268.306 kb on - strand, within sprat 2268.416 kb on - strand, within sprat 2268.468 kb on - strand, within sprat 2268.516 kb on + strandat 2268.516 kb on + strandat 2268.536 kb on - strandat 2268.574 kb on - strandat 2268.574 kb on - strandat 2268.579 kb on + strandat 2268.594 kb on - strandat 2268.660 kb on + strandat 2268.660 kb on + strandat 2268.684 kb on + strandat 2268.694 kb on - strandat 2268.694 kb on - strandat 2268.813 kb on - strandat 2268.813 kb on - strandat 2268.895 kb on + strandat 2268.895 kb on + strandat 2268.933 kb on + strand, within rtnat 2268.933 kb on + strand, within rtnat 2268.971 kb on - strand, within rtnat 2269.018 kb on - strand, within rtnat 2269.083 kb on - strand, within rtnat 2269.083 kb on - strand, within rtnat 2269.086 kb on + strand, within rtnat 2269.147 kb on + strand, within rtnat 2269.147 kb on + strand, within rtnat 2269.147 kb on + strand, within rtnat 2269.155 kb on - strand, within rtnat 2269.155 kb on - strand, within rtnat 2269.338 kb on + strand, within rtnat 2269.358 kb on + strand, within rtnat 2269.358 kb on + strand, within rtnat 2269.415 kb on - strand, within rtnat 2269.425 kb on - strand, within rtnat 2269.447 kb on - strand, within rtnat 2269.447 kb on - strand, within rtnat 2269.511 kb on - strand, within rtnat 2269.511 kb on - strand, within rtnat 2269.516 kb on - strand, within rtnat 2269.630 kb on - strand, within rtnat 2269.727 kb on + strand, within rtnat 2269.739 kb on + strand, within rtnat 2269.753 kb on - strand, within rtnat 2269.998 kb on + strand, within rtnat 2270.030 kb on - strand, within rtnat 2270.185 kb on - strandat 2270.329 kb on - strandat 2270.363 kb on + strandat 2270.421 kb on + strandat 2270.421 kb on + strandat 2270.429 kb on - strandat 2270.439 kb on + strandat 2270.440 kb on + strandat 2270.440 kb on + strandat 2270.591 kb on + strand, within yejAat 2270.639 kb on - strand, within yejAat 2270.639 kb on - strand, within yejAat 2270.845 kb on + strand, within yejAat 2270.852 kb on - strand, within yejAat 2271.011 kb on + strand, within yejAat 2271.016 kb on + strand, within yejAat 2271.058 kb on + strand, within yejAat 2271.058 kb on + strand, within yejAat 2271.085 kb on + strand, within yejAat 2271.085 kb on + strand, within yejAat 2271.210 kb on - strand, within yejAat 2271.210 kb on - strand, within yejAat 2271.239 kb on - strand, within yejAat 2271.239 kb on - strand, within yejAat 2271.239 kb on - strand, within yejAat 2271.239 kb on - strand, within yejAat 2271.240 kb on - strand, within yejAat 2271.295 kb on + strand, within yejAat 2271.300 kb on + strand, within yejA

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
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2,267,793 - +2.2
2,267,806 - +1.5
2,267,817 + +1.4
2,267,819 - +1.3
2,267,853 + -0.6
2,268,026 + -0.3
2,268,026 + -2.5
2,268,056 + -1.0
2,268,058 - spr b2175 0.10 +0.2
2,268,072 - spr b2175 0.13 -3.2
2,268,142 - spr b2175 0.25 -1.6
2,268,216 + spr b2175 0.38 -2.5
2,268,216 + spr b2175 0.38 -2.1
2,268,216 + spr b2175 0.38 -1.6
2,268,306 - spr b2175 0.54 -2.9
2,268,416 - spr b2175 0.73 -0.9
2,268,468 - spr b2175 0.82 -0.3
2,268,516 + -2.3
2,268,516 + -2.8
2,268,536 - -0.3
2,268,574 - -0.3
2,268,574 - +0.7
2,268,579 + +0.6
2,268,594 - -1.3
2,268,660 + +0.7
2,268,660 + -0.3
2,268,684 + -1.9
2,268,694 - +1.2
2,268,694 - +1.0
2,268,813 - +0.9
2,268,813 - +0.7
2,268,895 + -0.3
2,268,895 + -2.1
2,268,933 + rtn b2176 0.12 -2.2
2,268,933 + rtn b2176 0.12 +1.0
2,268,971 - rtn b2176 0.14 +0.8
2,269,018 - rtn b2176 0.17 +1.3
2,269,083 - rtn b2176 0.22 -0.1
2,269,083 - rtn b2176 0.22 -0.1
2,269,086 + rtn b2176 0.22 +1.0
2,269,147 + rtn b2176 0.26 +1.4
2,269,147 + rtn b2176 0.26 +0.3
2,269,147 + rtn b2176 0.26 -0.5
2,269,155 - rtn b2176 0.26 +0.7
2,269,155 - rtn b2176 0.26 +0.8
2,269,338 + rtn b2176 0.38 -0.2
2,269,358 + rtn b2176 0.39 -0.3
2,269,358 + rtn b2176 0.39 -1.9
2,269,415 - rtn b2176 0.43 -0.4
2,269,425 - rtn b2176 0.43 +0.7
2,269,447 - rtn b2176 0.45 +0.1
2,269,447 - rtn b2176 0.45 -1.0
2,269,511 - rtn b2176 0.49 -2.0
2,269,511 - rtn b2176 0.49 -1.0
2,269,516 - rtn b2176 0.49 +1.7
2,269,630 - rtn b2176 0.57 +0.4
2,269,727 + rtn b2176 0.63 -0.3
2,269,739 + rtn b2176 0.64 -3.0
2,269,753 - rtn b2176 0.65 +0.7
2,269,998 + rtn b2176 0.80 +0.8
2,270,030 - rtn b2176 0.82 +1.0
2,270,185 - +0.3
2,270,329 - +1.0
2,270,363 + +0.1
2,270,421 + +1.0
2,270,421 + +0.3
2,270,429 - -1.7
2,270,439 + -2.5
2,270,440 + -1.3
2,270,440 + +3.1
2,270,591 + yejA b2177 0.11 +0.1
2,270,639 - yejA b2177 0.14 -1.2
2,270,639 - yejA b2177 0.14 +1.3
2,270,845 + yejA b2177 0.25 -1.9
2,270,852 - yejA b2177 0.26 +1.3
2,271,011 + yejA b2177 0.34 +0.7
2,271,016 + yejA b2177 0.35 -3.1
2,271,058 + yejA b2177 0.37 +1.2
2,271,058 + yejA b2177 0.37 +0.7
2,271,085 + yejA b2177 0.39 +0.3
2,271,085 + yejA b2177 0.39 -0.5
2,271,210 - yejA b2177 0.45 +0.0
2,271,210 - yejA b2177 0.45 +1.5
2,271,239 - yejA b2177 0.47 +1.1
2,271,239 - yejA b2177 0.47 -0.9
2,271,239 - yejA b2177 0.47 +0.7
2,271,239 - yejA b2177 0.47 +1.4
2,271,240 - yejA b2177 0.47 -0.3
2,271,295 + yejA b2177 0.50 +1.3
2,271,300 + yejA b2177 0.50 -2.6

Or see this region's nucleotide sequence