Strain Fitness in Escherichia coli BW25113 around b1692

Experiment: LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiN and ydiB are separated by 11 nucleotidesydiB and aroD are separated by 30 nucleotidesaroD and ydiF are separated by 142 nucleotides b1691: ydiN - predicted transporter (RefSeq), at 1,770,536 to 1,771,801 ydiN b1692: ydiB - quinate/shikimate 5-dehydrogenase, NAD(P)-binding (NCBI), at 1,771,813 to 1,772,679 ydiB b1693: aroD - 3-dehydroquinate dehydratase (NCBI), at 1,772,710 to 1,773,468 aroD b1694: ydiF - fused predicted acetyl-CoA:acetoacetyl-CoA transferase: alpha subunit/beta subunit (NCBI), at 1,773,611 to 1,775,206 ydiF Position (kb) 1771 1772 1773Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1770.858 kb on - strand, within ydiNat 1770.860 kb on - strand, within ydiNat 1770.860 kb on - strand, within ydiNat 1770.870 kb on - strand, within ydiNat 1770.870 kb on - strand, within ydiNat 1770.870 kb on - strand, within ydiNat 1770.882 kb on - strand, within ydiNat 1770.906 kb on - strand, within ydiNat 1771.124 kb on + strand, within ydiNat 1771.160 kb on + strand, within ydiNat 1771.195 kb on + strand, within ydiNat 1771.269 kb on + strand, within ydiNat 1771.273 kb on + strand, within ydiNat 1771.273 kb on + strand, within ydiNat 1771.273 kb on + strand, within ydiNat 1771.311 kb on + strand, within ydiNat 1771.560 kb on + strand, within ydiNat 1771.564 kb on + strand, within ydiNat 1771.571 kb on + strand, within ydiNat 1771.571 kb on + strand, within ydiNat 1771.859 kb on - strandat 1771.864 kb on - strandat 1771.927 kb on - strand, within ydiBat 1771.950 kb on - strand, within ydiBat 1771.957 kb on - strand, within ydiBat 1771.957 kb on - strand, within ydiBat 1771.964 kb on - strand, within ydiBat 1772.008 kb on - strand, within ydiBat 1772.113 kb on + strand, within ydiBat 1772.113 kb on + strand, within ydiBat 1772.121 kb on + strand, within ydiBat 1772.148 kb on - strand, within ydiBat 1772.163 kb on - strand, within ydiBat 1772.207 kb on - strand, within ydiBat 1772.207 kb on - strand, within ydiBat 1772.610 kb on - strandat 1772.623 kb on - strandat 1772.623 kb on - strandat 1772.882 kb on - strand, within aroDat 1772.959 kb on + strand, within aroDat 1772.959 kb on + strand, within aroDat 1773.012 kb on - strand, within aroDat 1773.094 kb on + strand, within aroDat 1773.094 kb on + strand, within aroDat 1773.181 kb on - strand, within aroDat 1773.181 kb on - strand, within aroDat 1773.228 kb on - strand, within aroDat 1773.239 kb on + strand, within aroDat 1773.247 kb on - strand, within aroDat 1773.247 kb on - strand, within aroDat 1773.271 kb on + strand, within aroDat 1773.272 kb on + strand, within aroDat 1773.279 kb on - strand, within aroDat 1773.291 kb on + strand, within aroDat 1773.440 kb on + strandat 1773.440 kb on + strandat 1773.442 kb on + strandat 1773.442 kb on + strandat 1773.641 kb on - strandat 1773.665 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
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1,770,858 - ydiN b1691 0.25 +0.5
1,770,860 - ydiN b1691 0.26 +0.5
1,770,860 - ydiN b1691 0.26 +0.5
1,770,870 - ydiN b1691 0.26 +0.5
1,770,870 - ydiN b1691 0.26 +2.3
1,770,870 - ydiN b1691 0.26 -0.5
1,770,882 - ydiN b1691 0.27 +0.5
1,770,906 - ydiN b1691 0.29 +0.5
1,771,124 + ydiN b1691 0.46 +0.5
1,771,160 + ydiN b1691 0.49 +0.5
1,771,195 + ydiN b1691 0.52 -1.1
1,771,269 + ydiN b1691 0.58 +0.5
1,771,273 + ydiN b1691 0.58 -0.5
1,771,273 + ydiN b1691 0.58 +0.5
1,771,273 + ydiN b1691 0.58 +2.8
1,771,311 + ydiN b1691 0.61 +0.5
1,771,560 + ydiN b1691 0.81 +0.5
1,771,564 + ydiN b1691 0.81 -0.5
1,771,571 + ydiN b1691 0.82 -0.5
1,771,571 + ydiN b1691 0.82 +0.5
1,771,859 - +1.5
1,771,864 - +0.5
1,771,927 - ydiB b1692 0.13 -1.5
1,771,950 - ydiB b1692 0.16 +0.5
1,771,957 - ydiB b1692 0.17 +0.5
1,771,957 - ydiB b1692 0.17 -0.5
1,771,964 - ydiB b1692 0.17 +0.5
1,772,008 - ydiB b1692 0.22 +0.5
1,772,113 + ydiB b1692 0.35 -0.5
1,772,113 + ydiB b1692 0.35 -1.1
1,772,121 + ydiB b1692 0.36 +0.1
1,772,148 - ydiB b1692 0.39 +0.9
1,772,163 - ydiB b1692 0.40 +1.9
1,772,207 - ydiB b1692 0.45 -0.2
1,772,207 - ydiB b1692 0.45 +1.2
1,772,610 - -1.3
1,772,623 - -1.1
1,772,623 - -0.5
1,772,882 - aroD b1693 0.23 -1.8
1,772,959 + aroD b1693 0.33 -0.5
1,772,959 + aroD b1693 0.33 -3.2
1,773,012 - aroD b1693 0.40 +0.5
1,773,094 + aroD b1693 0.51 -0.5
1,773,094 + aroD b1693 0.51 -1.6
1,773,181 - aroD b1693 0.62 -1.9
1,773,181 - aroD b1693 0.62 -2.3
1,773,228 - aroD b1693 0.68 -1.1
1,773,239 + aroD b1693 0.70 -1.1
1,773,247 - aroD b1693 0.71 -0.5
1,773,247 - aroD b1693 0.71 -0.5
1,773,271 + aroD b1693 0.74 -0.8
1,773,272 + aroD b1693 0.74 -1.7
1,773,279 - aroD b1693 0.75 +0.5
1,773,291 + aroD b1693 0.77 -0.5
1,773,440 + -1.1
1,773,440 + -1.5
1,773,442 + -0.5
1,773,442 + +1.0
1,773,641 - -1.1
1,773,665 - -0.5

Or see this region's nucleotide sequence