Experiment: LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydiM and ydiN are separated by 226 nucleotides ydiN and ydiB are separated by 11 nucleotides ydiB and aroD are separated by 30 nucleotides
b1690: ydiM - predicted transporter (NCBI), at 1,769,095 to 1,770,309
ydiM
b1691: ydiN - predicted transporter (RefSeq), at 1,770,536 to 1,771,801
ydiN
b1692: ydiB - quinate/shikimate 5-dehydrogenase, NAD(P)-binding (NCBI), at 1,771,813 to 1,772,679
ydiB
b1693: aroD - 3-dehydroquinate dehydratase (NCBI), at 1,772,710 to 1,773,468
aroD
Position (kb)
1770
1771
1772 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1769.548 kb on - strand, within ydiM at 1769.556 kb on - strand, within ydiM at 1769.561 kb on - strand, within ydiM at 1769.566 kb on - strand, within ydiM at 1769.641 kb on - strand, within ydiM at 1769.646 kb on + strand, within ydiM at 1769.653 kb on - strand, within ydiM at 1769.751 kb on - strand, within ydiM at 1769.770 kb on - strand, within ydiM at 1769.791 kb on - strand, within ydiM at 1769.817 kb on + strand, within ydiM at 1769.817 kb on - strand, within ydiM at 1769.847 kb on - strand, within ydiM at 1769.847 kb on - strand, within ydiM at 1769.942 kb on - strand, within ydiM at 1769.942 kb on - strand, within ydiM at 1769.951 kb on + strand, within ydiM at 1770.096 kb on + strand, within ydiM at 1770.106 kb on + strand, within ydiM at 1770.858 kb on - strand, within ydiN at 1770.860 kb on - strand, within ydiN at 1770.860 kb on - strand, within ydiN at 1770.870 kb on - strand, within ydiN at 1770.870 kb on - strand, within ydiN at 1770.870 kb on - strand, within ydiN at 1770.882 kb on - strand, within ydiN at 1770.906 kb on - strand, within ydiN at 1771.124 kb on + strand, within ydiN at 1771.160 kb on + strand, within ydiN at 1771.195 kb on + strand, within ydiN at 1771.269 kb on + strand, within ydiN at 1771.273 kb on + strand, within ydiN at 1771.273 kb on + strand, within ydiN at 1771.273 kb on + strand, within ydiN at 1771.311 kb on + strand, within ydiN at 1771.560 kb on + strand, within ydiN at 1771.564 kb on + strand, within ydiN at 1771.571 kb on + strand, within ydiN at 1771.571 kb on + strand, within ydiN at 1771.859 kb on - strand at 1771.864 kb on - strand at 1771.927 kb on - strand, within ydiB at 1771.950 kb on - strand, within ydiB at 1771.957 kb on - strand, within ydiB at 1771.957 kb on - strand, within ydiB at 1771.964 kb on - strand, within ydiB at 1772.008 kb on - strand, within ydiB at 1772.113 kb on + strand, within ydiB at 1772.113 kb on + strand, within ydiB at 1772.121 kb on + strand, within ydiB at 1772.148 kb on - strand, within ydiB at 1772.163 kb on - strand, within ydiB at 1772.207 kb on - strand, within ydiB at 1772.207 kb on - strand, within ydiB at 1772.610 kb on - strand at 1772.623 kb on - strand at 1772.623 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM remove 1,769,548 - ydiM b1690 0.37 -0.5 1,769,556 - ydiM b1690 0.38 +0.5 1,769,561 - ydiM b1690 0.38 -0.5 1,769,566 - ydiM b1690 0.39 -0.5 1,769,641 - ydiM b1690 0.45 +0.5 1,769,646 + ydiM b1690 0.45 +0.5 1,769,653 - ydiM b1690 0.46 -0.5 1,769,751 - ydiM b1690 0.54 +0.5 1,769,770 - ydiM b1690 0.56 +0.5 1,769,791 - ydiM b1690 0.57 +0.5 1,769,817 + ydiM b1690 0.59 +0.5 1,769,817 - ydiM b1690 0.59 +0.5 1,769,847 - ydiM b1690 0.62 +0.5 1,769,847 - ydiM b1690 0.62 +0.5 1,769,942 - ydiM b1690 0.70 +0.5 1,769,942 - ydiM b1690 0.70 +0.5 1,769,951 + ydiM b1690 0.70 +0.5 1,770,096 + ydiM b1690 0.82 +0.5 1,770,106 + ydiM b1690 0.83 +0.5 1,770,858 - ydiN b1691 0.25 +0.5 1,770,860 - ydiN b1691 0.26 +0.5 1,770,860 - ydiN b1691 0.26 +0.5 1,770,870 - ydiN b1691 0.26 +0.5 1,770,870 - ydiN b1691 0.26 +2.3 1,770,870 - ydiN b1691 0.26 -0.5 1,770,882 - ydiN b1691 0.27 +0.5 1,770,906 - ydiN b1691 0.29 +0.5 1,771,124 + ydiN b1691 0.46 +0.5 1,771,160 + ydiN b1691 0.49 +0.5 1,771,195 + ydiN b1691 0.52 -1.1 1,771,269 + ydiN b1691 0.58 +0.5 1,771,273 + ydiN b1691 0.58 -0.5 1,771,273 + ydiN b1691 0.58 +0.5 1,771,273 + ydiN b1691 0.58 +2.8 1,771,311 + ydiN b1691 0.61 +0.5 1,771,560 + ydiN b1691 0.81 +0.5 1,771,564 + ydiN b1691 0.81 -0.5 1,771,571 + ydiN b1691 0.82 -0.5 1,771,571 + ydiN b1691 0.82 +0.5 1,771,859 - +1.5 1,771,864 - +0.5 1,771,927 - ydiB b1692 0.13 -1.5 1,771,950 - ydiB b1692 0.16 +0.5 1,771,957 - ydiB b1692 0.17 +0.5 1,771,957 - ydiB b1692 0.17 -0.5 1,771,964 - ydiB b1692 0.17 +0.5 1,772,008 - ydiB b1692 0.22 +0.5 1,772,113 + ydiB b1692 0.35 -0.5 1,772,113 + ydiB b1692 0.35 -1.1 1,772,121 + ydiB b1692 0.36 +0.1 1,772,148 - ydiB b1692 0.39 +0.9 1,772,163 - ydiB b1692 0.40 +1.9 1,772,207 - ydiB b1692 0.45 -0.2 1,772,207 - ydiB b1692 0.45 +1.2 1,772,610 - -1.3 1,772,623 - -1.1 1,772,623 - -0.5
Or see this region's nucleotide sequence