Strain Fitness in Escherichia coli BW25113 around b1687

Experiment: LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrydB and ydiH are separated by 153 nucleotidesydiH and ydiI are separated by 99 nucleotidesydiI and ydiJ overlap by 4 nucleotidesydiJ and ydiK are separated by 388 nucleotides b4430: rydB - regulatory sRNA (NCBI), at 1,762,737 to 1,762,804 rydB b1685: ydiH - predicted protein (RefSeq), at 1,762,958 to 1,763,146 ydiH b1686: ydiI - hypothetical protein (NCBI), at 1,763,246 to 1,763,656 ydiI b1687: ydiJ - predicted FAD-linked oxidoreductase (NCBI), at 1,763,653 to 1,766,709 ydiJ b1688: ydiK - predicted inner membrane protein (NCBI), at 1,767,098 to 1,768,210 ydiK Position (kb) 1763 1764 1765 1766 1767Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1762.891 kb on - strandat 1762.891 kb on - strandat 1762.904 kb on - strandat 1763.084 kb on - strand, within ydiHat 1763.150 kb on - strandat 1763.150 kb on - strandat 1763.186 kb on - strandat 1763.195 kb on + strandat 1763.195 kb on + strandat 1763.545 kb on + strand, within ydiIat 1763.577 kb on - strand, within ydiIat 1763.577 kb on - strand, within ydiIat 1763.692 kb on - strandat 1763.886 kb on - strandat 1764.308 kb on + strand, within ydiJat 1764.517 kb on + strand, within ydiJat 1764.702 kb on - strand, within ydiJat 1764.876 kb on - strand, within ydiJat 1764.876 kb on - strand, within ydiJat 1764.904 kb on + strand, within ydiJat 1765.183 kb on + strand, within ydiJat 1765.227 kb on - strand, within ydiJat 1765.227 kb on - strand, within ydiJat 1765.305 kb on - strand, within ydiJat 1765.305 kb on - strand, within ydiJat 1765.363 kb on + strand, within ydiJat 1765.363 kb on + strand, within ydiJat 1765.491 kb on - strand, within ydiJat 1765.491 kb on - strand, within ydiJat 1765.685 kb on - strand, within ydiJat 1765.818 kb on - strand, within ydiJat 1766.007 kb on - strand, within ydiJat 1766.007 kb on - strand, within ydiJat 1766.258 kb on - strand, within ydiJat 1766.258 kb on - strand, within ydiJat 1766.301 kb on + strand, within ydiJat 1766.335 kb on - strand, within ydiJat 1766.385 kb on + strand, within ydiJat 1766.385 kb on + strand, within ydiJat 1766.465 kb on + strandat 1766.562 kb on - strandat 1766.562 kb on - strandat 1766.608 kb on + strandat 1766.730 kb on + strandat 1766.744 kb on - strandat 1766.744 kb on - strandat 1766.831 kb on - strandat 1766.897 kb on + strandat 1767.033 kb on - strandat 1767.033 kb on - strandat 1767.043 kb on - strandat 1767.115 kb on + strandat 1767.250 kb on + strand, within ydiKat 1767.471 kb on - strand, within ydiKat 1767.542 kb on + strand, within ydiKat 1767.589 kb on + strand, within ydiKat 1767.631 kb on - strand, within ydiK

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
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1,762,891 - +1.2
1,762,891 - -2.3
1,762,904 - -1.5
1,763,084 - ydiH b1685 0.67 -0.4
1,763,150 - +1.0
1,763,150 - -1.5
1,763,186 - -1.1
1,763,195 + +1.3
1,763,195 + +1.1
1,763,545 + ydiI b1686 0.73 -0.8
1,763,577 - ydiI b1686 0.81 -2.1
1,763,577 - ydiI b1686 0.81 -1.5
1,763,692 - -0.5
1,763,886 - +0.6
1,764,308 + ydiJ b1687 0.21 -1.5
1,764,517 + ydiJ b1687 0.28 -2.1
1,764,702 - ydiJ b1687 0.34 -1.5
1,764,876 - ydiJ b1687 0.40 +1.1
1,764,876 - ydiJ b1687 0.40 -0.5
1,764,904 + ydiJ b1687 0.41 -1.5
1,765,183 + ydiJ b1687 0.50 -1.3
1,765,227 - ydiJ b1687 0.51 +3.4
1,765,227 - ydiJ b1687 0.51 -2.1
1,765,305 - ydiJ b1687 0.54 +0.8
1,765,305 - ydiJ b1687 0.54 -2.7
1,765,363 + ydiJ b1687 0.56 +1.1
1,765,363 + ydiJ b1687 0.56 +1.1
1,765,491 - ydiJ b1687 0.60 -0.9
1,765,491 - ydiJ b1687 0.60 +1.7
1,765,685 - ydiJ b1687 0.66 -1.5
1,765,818 - ydiJ b1687 0.71 -0.3
1,766,007 - ydiJ b1687 0.77 +1.2
1,766,007 - ydiJ b1687 0.77 +1.0
1,766,258 - ydiJ b1687 0.85 -1.1
1,766,258 - ydiJ b1687 0.85 -1.5
1,766,301 + ydiJ b1687 0.87 +0.3
1,766,335 - ydiJ b1687 0.88 +0.2
1,766,385 + ydiJ b1687 0.89 +0.2
1,766,385 + ydiJ b1687 0.89 -1.3
1,766,465 + +0.4
1,766,562 - +1.3
1,766,562 - -1.1
1,766,608 + -2.8
1,766,730 + -3.4
1,766,744 - +0.3
1,766,744 - -2.1
1,766,831 - -0.5
1,766,897 + -1.7
1,767,033 - -0.1
1,767,033 - -1.3
1,767,043 - +0.0
1,767,115 + -0.0
1,767,250 + ydiK b1688 0.14 -0.0
1,767,471 - ydiK b1688 0.34 -1.4
1,767,542 + ydiK b1688 0.40 +0.1
1,767,589 + ydiK b1688 0.44 +1.0
1,767,631 - ydiK b1688 0.48 -0.2

Or see this region's nucleotide sequence