Experiment: LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt b1559 and ydfU are separated by 13 nucleotides ydfU and rem are separated by 346 nucleotides rem and hokD are separated by 216 nucleotides
b1559: b1559 - orf, hypothetical protein (VIMSS), at 1,640,513 to 1,641,265
b1559
b1560: ydfU - Qin prophage; predicted protein (RefSeq), at 1,641,279 to 1,642,328
ydfU
b1561: rem - Qin prophage; predicted protein (NCBI), at 1,642,675 to 1,642,926
rem
b1562: hokD - Qin prophage; small toxic polypeptide (NCBI), at 1,643,143 to 1,643,298
hokD
Position (kb)
1641
1642
1643 Strain fitness (log2 ratio)
-1
0
1
2 at 1640.350 kb on + strand at 1640.365 kb on - strand at 1640.603 kb on - strand, within b1559 at 1640.620 kb on - strand, within b1559 at 1640.620 kb on - strand, within b1559 at 1640.635 kb on - strand, within b1559 at 1640.635 kb on - strand, within b1559 at 1640.771 kb on - strand, within b1559 at 1640.876 kb on - strand, within b1559 at 1640.876 kb on - strand, within b1559 at 1640.884 kb on + strand, within b1559 at 1640.884 kb on + strand, within b1559 at 1640.967 kb on - strand, within b1559 at 1641.185 kb on - strand, within b1559 at 1641.196 kb on + strand at 1641.253 kb on + strand at 1641.585 kb on + strand, within ydfU at 1641.585 kb on + strand, within ydfU at 1641.779 kb on + strand, within ydfU at 1641.831 kb on - strand, within ydfU at 1641.934 kb on - strand, within ydfU at 1642.013 kb on - strand, within ydfU at 1642.253 kb on - strand at 1642.270 kb on + strand at 1642.284 kb on - strand at 1642.299 kb on + strand at 1642.307 kb on - strand at 1642.382 kb on + strand at 1642.401 kb on + strand at 1642.406 kb on + strand at 1642.488 kb on + strand at 1642.531 kb on - strand at 1642.629 kb on + strand at 1642.629 kb on + strand at 1642.629 kb on + strand at 1642.645 kb on + strand at 1642.663 kb on - strand at 1642.769 kb on - strand, within rem at 1643.141 kb on + strand at 1643.261 kb on - strand, within hokD
Per-strain Table
Position Strand Gene LocusTag Fraction LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM remove 1,640,350 + -0.4 1,640,365 - +2.5 1,640,603 - b1559 b1559 0.12 -1.5 1,640,620 - b1559 b1559 0.14 +1.6 1,640,620 - b1559 b1559 0.14 +0.3 1,640,635 - b1559 b1559 0.16 +0.5 1,640,635 - b1559 b1559 0.16 -0.6 1,640,771 - b1559 b1559 0.34 +1.0 1,640,876 - b1559 b1559 0.48 +2.4 1,640,876 - b1559 b1559 0.48 +0.4 1,640,884 + b1559 b1559 0.49 -0.4 1,640,884 + b1559 b1559 0.49 -1.0 1,640,967 - b1559 b1559 0.60 -0.1 1,641,185 - b1559 b1559 0.89 +0.5 1,641,196 + +0.0 1,641,253 + +0.6 1,641,585 + ydfU b1560 0.29 +0.3 1,641,585 + ydfU b1560 0.29 -0.7 1,641,779 + ydfU b1560 0.48 -0.5 1,641,831 - ydfU b1560 0.53 -1.6 1,641,934 - ydfU b1560 0.62 -0.0 1,642,013 - ydfU b1560 0.70 -0.1 1,642,253 - -1.7 1,642,270 + +1.2 1,642,284 - +0.9 1,642,299 + +0.3 1,642,307 - +1.6 1,642,382 + +1.3 1,642,401 + -1.6 1,642,406 + +0.7 1,642,488 + +1.6 1,642,531 - -1.7 1,642,629 + +0.6 1,642,629 + +0.6 1,642,629 + +0.6 1,642,645 + +0.6 1,642,663 - -0.4 1,642,769 - rem b1561 0.37 -0.7 1,643,141 + +0.0 1,643,261 - hokD b1562 0.76 +0.7
Or see this region's nucleotide sequence