Experiment: LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glnH and dps are separated by 403 nucleotides dps and rhtA are separated by 298 nucleotides
b0811: glnH - glutamine ABC transporter periplasmic protein (NCBI), at 846,481 to 847,227
glnH
b0812: dps - DNA protection during starvation conditions (NCBI), at 847,631 to 848,134
dps
b0813: rhtA - threonine and homoserine efflux system (NCBI), at 848,433 to 849,320
rhtA
Position (kb)
847
848
849 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 846.658 kb on - strand, within glnH at 846.694 kb on + strand, within glnH at 846.727 kb on - strand, within glnH at 846.729 kb on + strand, within glnH at 846.731 kb on + strand, within glnH at 846.734 kb on - strand, within glnH at 846.745 kb on - strand, within glnH at 846.745 kb on - strand, within glnH at 846.812 kb on - strand, within glnH at 846.817 kb on + strand, within glnH at 846.817 kb on + strand, within glnH at 847.125 kb on + strand, within glnH at 847.125 kb on + strand, within glnH at 847.218 kb on - strand at 847.218 kb on - strand at 847.222 kb on + strand at 847.413 kb on + strand at 847.599 kb on + strand at 847.608 kb on + strand at 847.608 kb on + strand at 847.766 kb on - strand, within dps at 847.861 kb on + strand, within dps at 847.887 kb on - strand, within dps at 847.918 kb on - strand, within dps at 847.970 kb on + strand, within dps at 848.006 kb on - strand, within dps at 848.009 kb on - strand, within dps at 848.009 kb on - strand, within dps at 848.033 kb on + strand, within dps at 848.041 kb on + strand, within dps at 848.041 kb on + strand, within dps at 848.066 kb on + strand, within dps at 848.072 kb on - strand, within dps at 848.074 kb on - strand, within dps at 848.076 kb on + strand, within dps at 848.182 kb on + strand at 848.192 kb on + strand at 848.207 kb on - strand at 848.207 kb on - strand at 848.208 kb on + strand at 848.208 kb on + strand at 848.208 kb on + strand at 848.208 kb on + strand at 848.216 kb on - strand at 848.216 kb on - strand at 848.216 kb on - strand at 848.216 kb on - strand at 848.221 kb on + strand at 848.227 kb on + strand at 848.361 kb on + strand at 848.361 kb on + strand at 848.402 kb on - strand at 848.402 kb on - strand at 848.404 kb on + strand at 848.415 kb on - strand at 848.442 kb on + strand at 848.465 kb on + strand at 848.471 kb on - strand at 848.482 kb on - strand at 848.483 kb on - strand at 848.484 kb on - strand at 848.485 kb on - strand at 848.488 kb on - strand at 848.488 kb on - strand at 848.497 kb on - strand at 848.499 kb on + strand at 848.525 kb on + strand, within rhtA at 848.525 kb on + strand, within rhtA at 848.526 kb on + strand, within rhtA at 848.532 kb on - strand, within rhtA at 848.533 kb on - strand, within rhtA at 848.695 kb on - strand, within rhtA at 848.695 kb on - strand, within rhtA at 848.695 kb on - strand, within rhtA at 848.717 kb on - strand, within rhtA at 848.717 kb on - strand, within rhtA at 848.717 kb on - strand, within rhtA at 848.718 kb on + strand, within rhtA at 848.718 kb on + strand, within rhtA at 848.772 kb on - strand, within rhtA at 848.772 kb on - strand, within rhtA at 848.796 kb on + strand, within rhtA at 848.809 kb on - strand, within rhtA at 848.809 kb on - strand, within rhtA at 848.905 kb on - strand, within rhtA at 848.991 kb on + strand, within rhtA at 848.991 kb on + strand, within rhtA at 849.017 kb on - strand, within rhtA at 849.017 kb on - strand, within rhtA at 849.028 kb on - strand, within rhtA at 849.108 kb on + strand, within rhtA
Per-strain Table
Position Strand Gene LocusTag Fraction LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM remove 846,658 - glnH b0811 0.24 +0.6 846,694 + glnH b0811 0.29 -0.8 846,727 - glnH b0811 0.33 -0.5 846,729 + glnH b0811 0.33 -2.4 846,731 + glnH b0811 0.33 +0.7 846,734 - glnH b0811 0.34 -1.2 846,745 - glnH b0811 0.35 +1.0 846,745 - glnH b0811 0.35 -0.3 846,812 - glnH b0811 0.44 +0.6 846,817 + glnH b0811 0.45 -1.5 846,817 + glnH b0811 0.45 +1.4 847,125 + glnH b0811 0.86 +0.6 847,125 + glnH b0811 0.86 +0.9 847,218 - -1.6 847,218 - -1.6 847,222 + +0.4 847,413 + +1.1 847,599 + -0.0 847,608 + -3.1 847,608 + -0.7 847,766 - dps b0812 0.27 +0.9 847,861 + dps b0812 0.46 +0.6 847,887 - dps b0812 0.51 +0.2 847,918 - dps b0812 0.57 -2.1 847,970 + dps b0812 0.67 +0.9 848,006 - dps b0812 0.74 +2.0 848,009 - dps b0812 0.75 +0.4 848,009 - dps b0812 0.75 +2.1 848,033 + dps b0812 0.80 -3.6 848,041 + dps b0812 0.81 +0.7 848,041 + dps b0812 0.81 +1.1 848,066 + dps b0812 0.86 +0.9 848,072 - dps b0812 0.88 -1.5 848,074 - dps b0812 0.88 -0.5 848,076 + dps b0812 0.88 +0.6 848,182 + +2.0 848,192 + +0.0 848,207 - -1.6 848,207 - -1.3 848,208 + +0.8 848,208 + -1.1 848,208 + +0.7 848,208 + -1.6 848,216 - +2.2 848,216 - -1.8 848,216 - +1.2 848,216 - -2.4 848,221 + +0.4 848,227 + +1.2 848,361 + -1.8 848,361 + -1.3 848,402 - -0.8 848,402 - -1.3 848,404 + +0.7 848,415 - +1.7 848,442 + -0.8 848,465 + -0.8 848,471 - +0.4 848,482 - -0.4 848,483 - +0.7 848,484 - +0.1 848,485 - +0.3 848,488 - +0.7 848,488 - +1.0 848,497 - +1.1 848,499 + +0.9 848,525 + rhtA b0813 0.10 +0.7 848,525 + rhtA b0813 0.10 +0.7 848,526 + rhtA b0813 0.10 -0.5 848,532 - rhtA b0813 0.11 +0.6 848,533 - rhtA b0813 0.11 -1.4 848,695 - rhtA b0813 0.30 +1.9 848,695 - rhtA b0813 0.30 +2.0 848,695 - rhtA b0813 0.30 -2.3 848,717 - rhtA b0813 0.32 +0.6 848,717 - rhtA b0813 0.32 +1.1 848,717 - rhtA b0813 0.32 -0.7 848,718 + rhtA b0813 0.32 -1.0 848,718 + rhtA b0813 0.32 +0.6 848,772 - rhtA b0813 0.38 +0.7 848,772 - rhtA b0813 0.38 -2.7 848,796 + rhtA b0813 0.41 +0.4 848,809 - rhtA b0813 0.42 -0.3 848,809 - rhtA b0813 0.42 +0.4 848,905 - rhtA b0813 0.53 -1.3 848,991 + rhtA b0813 0.63 +0.7 848,991 + rhtA b0813 0.63 +0.3 849,017 - rhtA b0813 0.66 +1.9 849,017 - rhtA b0813 0.66 -2.4 849,028 - rhtA b0813 0.67 +0.5 849,108 + rhtA b0813 0.76 -0.5
Or see this region's nucleotide sequence