Strain Fitness in Pseudomonas simiae WCS417 around PS417_14880

Experiment: 2-Deoxy-D-Ribose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14870 and PS417_14875 overlap by 4 nucleotidesPS417_14875 and PS417_14880 are separated by 133 nucleotidesPS417_14880 and PS417_14885 are separated by 43 nucleotidesPS417_14885 and PS417_14890 overlap by 4 nucleotides PS417_14870: PS417_14870 - transporter, at 3,248,656 to 3,249,546 _14870 PS417_14875: PS417_14875 - polyisoprenoid-binding protein, at 3,249,543 to 3,250,097 _14875 PS417_14880: PS417_14880 - thioesterase, at 3,250,231 to 3,250,725 _14880 PS417_14885: PS417_14885 - dienelactone hydrolase, at 3,250,769 to 3,251,656 _14885 PS417_14890: PS417_14890 - LysR family transcriptional regulator, at 3,251,653 to 3,252,528 _14890 Position (kb) 3250 3251Strain fitness (log2 ratio) -2 -1 0 1at 3249.328 kb on + strand, within PS417_14870at 3249.794 kb on - strand, within PS417_14875at 3249.968 kb on - strand, within PS417_14875at 3250.034 kb on - strand, within PS417_14875at 3250.060 kb on + strandat 3250.061 kb on - strandat 3250.099 kb on - strandat 3250.099 kb on - strandat 3250.099 kb on - strandat 3250.193 kb on + strandat 3250.344 kb on - strand, within PS417_14880at 3250.932 kb on - strand, within PS417_14885at 3250.932 kb on - strand, within PS417_14885at 3250.982 kb on + strand, within PS417_14885at 3250.991 kb on + strand, within PS417_14885at 3250.992 kb on - strand, within PS417_14885at 3251.008 kb on + strand, within PS417_14885at 3251.008 kb on + strand, within PS417_14885at 3251.134 kb on + strand, within PS417_14885at 3251.454 kb on - strand, within PS417_14885at 3251.496 kb on - strand, within PS417_14885at 3251.529 kb on - strand, within PS417_14885at 3251.537 kb on + strand, within PS417_14885at 3251.537 kb on + strand, within PS417_14885at 3251.538 kb on - strand, within PS417_14885at 3251.538 kb on - strand, within PS417_14885at 3251.539 kb on + strand, within PS417_14885at 3251.540 kb on - strand, within PS417_14885at 3251.543 kb on + strand, within PS417_14885at 3251.544 kb on - strand, within PS417_14885at 3251.544 kb on - strand, within PS417_14885at 3251.544 kb on - strand, within PS417_14885at 3251.588 kb on + strandat 3251.641 kb on + strandat 3251.642 kb on - strandat 3251.645 kb on + strandat 3251.645 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose 10 mM (C)
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3,249,328 + PS417_14870 0.75 -1.7
3,249,794 - PS417_14875 0.45 -0.6
3,249,968 - PS417_14875 0.77 -0.3
3,250,034 - PS417_14875 0.88 +0.4
3,250,060 + +0.8
3,250,061 - -0.2
3,250,099 - -1.0
3,250,099 - +0.1
3,250,099 - +1.1
3,250,193 + -2.5
3,250,344 - PS417_14880 0.23 +0.7
3,250,932 - PS417_14885 0.18 -1.7
3,250,932 - PS417_14885 0.18 +1.3
3,250,982 + PS417_14885 0.24 -0.8
3,250,991 + PS417_14885 0.25 -1.2
3,250,992 - PS417_14885 0.25 +0.5
3,251,008 + PS417_14885 0.27 -0.0
3,251,008 + PS417_14885 0.27 -1.4
3,251,134 + PS417_14885 0.41 -1.3
3,251,454 - PS417_14885 0.77 +0.3
3,251,496 - PS417_14885 0.82 +0.2
3,251,529 - PS417_14885 0.86 +0.2
3,251,537 + PS417_14885 0.86 +0.2
3,251,537 + PS417_14885 0.86 -2.0
3,251,538 - PS417_14885 0.87 -0.6
3,251,538 - PS417_14885 0.87 -0.8
3,251,539 + PS417_14885 0.87 +0.4
3,251,540 - PS417_14885 0.87 +0.1
3,251,543 + PS417_14885 0.87 +0.0
3,251,544 - PS417_14885 0.87 +0.4
3,251,544 - PS417_14885 0.87 -0.0
3,251,544 - PS417_14885 0.87 +0.0
3,251,588 + -0.2
3,251,641 + -1.2
3,251,642 - +0.2
3,251,645 + -0.2
3,251,645 + +0.5

Or see this region's nucleotide sequence