Strain Fitness in Pseudomonas simiae WCS417 around PS417_04055

Experiment: Deoxyribonucleic from herring sperm 5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04045 and PS417_04050 overlap by 1 nucleotidesPS417_04050 and PS417_04055 are separated by 10 nucleotidesPS417_04055 and PS417_04060 are separated by 10 nucleotides PS417_04045: PS417_04045 - peptide ABC transporter ATP-binding protein, at 907,238 to 908,209 _04045 PS417_04050: PS417_04050 - peptide ABC transporter ATP-binding protein, at 908,209 to 909,177 _04050 PS417_04055: PS417_04055 - peptide transporter, at 909,188 to 910,099 _04055 PS417_04060: PS417_04060 - dipeptide ABC transporter, permease component (from data), at 910,110 to 911,120 _04060 Position (kb) 909 910 911Strain fitness (log2 ratio) -2 -1 0 1at 908.306 kb on + strand, within PS417_04050at 908.306 kb on + strand, within PS417_04050at 908.709 kb on + strand, within PS417_04050at 909.315 kb on + strand, within PS417_04055at 909.365 kb on + strand, within PS417_04055at 909.522 kb on + strand, within PS417_04055at 909.523 kb on - strand, within PS417_04055at 909.570 kb on + strand, within PS417_04055at 909.570 kb on + strand, within PS417_04055at 909.916 kb on - strand, within PS417_04055at 909.932 kb on - strand, within PS417_04055at 910.423 kb on + strand, within PS417_04060at 910.424 kb on - strand, within PS417_04060at 910.933 kb on + strand, within PS417_04060at 910.946 kb on + strand, within PS417_04060

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 5 mg/mL (C)
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908,306 + PS417_04050 0.10 -1.7
908,306 + PS417_04050 0.10 -0.3
908,709 + PS417_04050 0.52 +0.1
909,315 + PS417_04055 0.14 -0.7
909,365 + PS417_04055 0.19 +0.9
909,522 + PS417_04055 0.37 -1.4
909,523 - PS417_04055 0.37 -0.8
909,570 + PS417_04055 0.42 -1.4
909,570 + PS417_04055 0.42 -1.9
909,916 - PS417_04055 0.80 +0.1
909,932 - PS417_04055 0.82 +0.0
910,423 + PS417_04060 0.31 -0.2
910,424 - PS417_04060 0.31 -0.7
910,933 + PS417_04060 0.81 -0.7
910,946 + PS417_04060 0.83 -0.1

Or see this region's nucleotide sequence