Experiment: Deoxyribonucleic from herring sperm 5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02740 and PS417_02745 are separated by 136 nucleotides PS417_02745 and PS417_02750 are separated by 80 nucleotides PS417_02750 and PS417_02755 overlap by 4 nucleotides PS417_02755 and PS417_02760 are separated by 97 nucleotides
PS417_02740: PS417_02740 - LysR family transcriptional regulator, at 624,631 to 625,530
_02740
PS417_02745: PS417_02745 - FMN-dependent NADH-azoreductase, at 625,667 to 626,308
_02745
PS417_02750: PS417_02750 - alpha/beta hydrolase, at 626,389 to 627,279
_02750
PS417_02755: PS417_02755 - membrane protein, at 627,276 to 628,145
_02755
PS417_02760: PS417_02760 - AraC family transcriptional regulator, at 628,243 to 629,031
_02760
Position (kb) 626
627
628 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 625.663 kb on - strand at 626.186 kb on + strand, within PS417_02745 at 626.187 kb on - strand, within PS417_02745 at 626.187 kb on - strand at 626.247 kb on + strand at 626.247 kb on + strand at 626.248 kb on - strand at 626.248 kb on - strand at 626.261 kb on + strand at 626.261 kb on + strand at 626.262 kb on - strand at 626.307 kb on - strand at 626.347 kb on + strand at 626.348 kb on - strand at 626.358 kb on + strand at 626.358 kb on + strand at 626.359 kb on - strand at 626.359 kb on - strand at 626.359 kb on - strand at 626.361 kb on + strand at 626.361 kb on + strand at 626.361 kb on + strand at 626.362 kb on - strand at 626.556 kb on - strand, within PS417_02750 at 626.556 kb on - strand, within PS417_02750 at 626.756 kb on - strand, within PS417_02750 at 626.923 kb on + strand, within PS417_02750 at 626.990 kb on - strand, within PS417_02750 at 627.127 kb on + strand, within PS417_02750 at 627.128 kb on - strand, within PS417_02750 at 627.163 kb on + strand, within PS417_02750 at 627.164 kb on - strand, within PS417_02750 at 627.349 kb on + strand at 627.503 kb on - strand, within PS417_02755 at 627.503 kb on - strand, within PS417_02755 at 627.598 kb on + strand, within PS417_02755 at 627.598 kb on + strand, within PS417_02755 at 627.652 kb on + strand at 627.793 kb on + strand, within PS417_02755 at 627.794 kb on - strand, within PS417_02755 at 627.901 kb on + strand, within PS417_02755 at 627.916 kb on + strand, within PS417_02755 at 627.916 kb on + strand, within PS417_02755 at 627.948 kb on + strand, within PS417_02755 at 627.949 kb on - strand, within PS417_02755 at 627.949 kb on - strand, within PS417_02755 at 627.949 kb on - strand, within PS417_02755 at 627.949 kb on - strand, within PS417_02755 at 628.014 kb on - strand, within PS417_02755 at 628.138 kb on + strand at 628.138 kb on + strand at 628.138 kb on + strand at 628.138 kb on + strand at 628.139 kb on - strand at 628.203 kb on - strand at 628.205 kb on - strand at 628.242 kb on + strand at 628.243 kb on - strand at 628.259 kb on + strand at 628.260 kb on - strand at 628.260 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 5 mg/mL (C) remove 625,663 - +0.0 626,186 + PS417_02745 0.81 -1.3 626,187 - PS417_02745 0.81 +0.7 626,187 - -0.0 626,247 + +1.0 626,247 + -1.1 626,248 - -0.2 626,248 - -0.6 626,261 + -0.2 626,261 + +2.0 626,262 - -0.9 626,307 - -0.4 626,347 + +1.7 626,348 - -0.2 626,358 + +0.3 626,358 + +2.0 626,359 - +1.0 626,359 - -2.4 626,359 - -0.3 626,361 + +2.5 626,361 + +3.0 626,361 + -1.7 626,362 - -0.0 626,556 - PS417_02750 0.19 -0.3 626,556 - PS417_02750 0.19 -0.3 626,756 - PS417_02750 0.41 +0.1 626,923 + PS417_02750 0.60 +0.1 626,990 - PS417_02750 0.67 -1.2 627,127 + PS417_02750 0.83 -2.0 627,128 - PS417_02750 0.83 -1.9 627,163 + PS417_02750 0.87 -1.0 627,164 - PS417_02750 0.87 -0.8 627,349 + +1.2 627,503 - PS417_02755 0.26 +1.0 627,503 - PS417_02755 0.26 -0.2 627,598 + PS417_02755 0.37 +0.1 627,598 + PS417_02755 0.37 +0.3 627,652 + -0.9 627,793 + PS417_02755 0.59 -1.2 627,794 - PS417_02755 0.60 -0.6 627,901 + PS417_02755 0.72 -1.4 627,916 + PS417_02755 0.74 -0.8 627,916 + PS417_02755 0.74 -0.8 627,948 + PS417_02755 0.77 +0.4 627,949 - PS417_02755 0.77 -0.6 627,949 - PS417_02755 0.77 +0.3 627,949 - PS417_02755 0.77 +3.0 627,949 - PS417_02755 0.77 -0.4 628,014 - PS417_02755 0.85 +1.2 628,138 + +0.2 628,138 + -0.5 628,138 + -0.2 628,138 + -0.0 628,139 - +0.1 628,203 - +1.0 628,205 - -0.1 628,242 + +0.2 628,243 - -1.4 628,259 + +0.5 628,260 - +2.0 628,260 - +0.1
Or see this region's nucleotide sequence