Strain Fitness in Pseudomonas simiae WCS417 around PS417_02515

Experiment: Deoxyribonucleic from herring sperm 5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02510 and PS417_02515 are separated by 54 nucleotidesPS417_02515 and PS417_02520 are separated by 139 nucleotides PS417_02510: PS417_02510 - ATP phosphoribosyltransferase regulatory subunit, at 573,489 to 574,676 _02510 PS417_02515: PS417_02515 - adenylosuccinate synthetase, at 574,731 to 576,020 _02515 PS417_02520: PS417_02520 - chemotaxis protein, at 576,160 to 578,094 _02520 Position (kb) 574 575 576 577Strain fitness (log2 ratio) -2 -1 0 1 2at 573.993 kb on + strand, within PS417_02510at 574.057 kb on + strand, within PS417_02510at 574.057 kb on + strand, within PS417_02510at 574.278 kb on + strand, within PS417_02510at 574.657 kb on + strandat 576.022 kb on - strandat 576.022 kb on - strandat 576.034 kb on + strandat 576.182 kb on + strandat 576.183 kb on - strandat 576.218 kb on + strandat 576.218 kb on + strandat 576.218 kb on + strandat 576.219 kb on - strandat 576.219 kb on - strandat 576.219 kb on - strandat 576.222 kb on + strandat 576.605 kb on + strand, within PS417_02520at 576.605 kb on + strand, within PS417_02520at 576.606 kb on - strand, within PS417_02520at 576.610 kb on + strand, within PS417_02520at 576.611 kb on - strand, within PS417_02520

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 5 mg/mL (C)
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573,993 + PS417_02510 0.42 -2.0
574,057 + PS417_02510 0.48 -2.0
574,057 + PS417_02510 0.48 -2.0
574,278 + PS417_02510 0.66 -1.2
574,657 + -0.4
576,022 - -1.2
576,022 - +0.6
576,034 + +0.4
576,182 + +1.0
576,183 - -0.2
576,218 + +2.4
576,218 + -0.0
576,218 + -0.4
576,219 - -1.2
576,219 - +1.0
576,219 - -0.1
576,222 + +0.4
576,605 + PS417_02520 0.23 +0.6
576,605 + PS417_02520 0.23 +0.1
576,606 - PS417_02520 0.23 -1.6
576,610 + PS417_02520 0.23 +0.8
576,611 - PS417_02520 0.23 +2.6

Or see this region's nucleotide sequence