Experiment: Deoxyribonucleic from herring sperm 5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23485 and PS417_23490 are separated by 57 nucleotides PS417_23490 and PS417_23495 are separated by 20 nucleotides PS417_23495 and PS417_23500 are separated by 2 nucleotides PS417_23500 and PS417_23505 are separated by 23 nucleotides PS417_23505 and PS417_23510 overlap by 8 nucleotides
PS417_23485: PS417_23485 - antibiotic biosynthesis monooxygenase, at 5,084,515 to 5,085,072
_23485
PS417_23490: PS417_23490 - dihydrofolate reductase, at 5,085,130 to 5,085,840
_23490
PS417_23495: PS417_23495 - GTP cyclohydrolase, at 5,085,861 to 5,086,415
_23495
PS417_23500: PS417_23500 - D-erythro-7,8-dihydroneopterin triphosphate epimerase, at 5,086,418 to 5,086,789
_23500
PS417_23505: PS417_23505 - cell division protein DedD, at 5,086,813 to 5,087,109
_23505
PS417_23510: PS417_23510 - HopJ type III effector protein, at 5,087,102 to 5,087,440
_23510
Position (kb) 5085
5086
5087 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5085.075 kb on - strand at 5085.096 kb on + strand at 5085.098 kb on + strand at 5085.099 kb on - strand at 5085.351 kb on + strand, within PS417_23490 at 5085.572 kb on - strand, within PS417_23490 at 5085.790 kb on + strand at 5085.790 kb on + strand at 5085.790 kb on + strand at 5085.790 kb on + strand at 5085.791 kb on - strand at 5085.831 kb on + strand at 5085.838 kb on + strand at 5085.838 kb on + strand at 5085.839 kb on - strand at 5085.860 kb on + strand at 5085.860 kb on + strand at 5085.860 kb on + strand at 5085.860 kb on + strand at 5085.860 kb on + strand at 5085.861 kb on - strand at 5085.861 kb on - strand at 5085.861 kb on - strand at 5086.068 kb on + strand, within PS417_23495 at 5086.069 kb on - strand, within PS417_23495 at 5086.122 kb on + strand, within PS417_23495 at 5086.122 kb on + strand, within PS417_23495 at 5086.123 kb on - strand, within PS417_23495 at 5086.123 kb on - strand, within PS417_23495 at 5086.123 kb on - strand, within PS417_23495 at 5086.179 kb on + strand, within PS417_23495 at 5086.179 kb on + strand, within PS417_23495 at 5086.179 kb on + strand, within PS417_23495 at 5086.180 kb on - strand, within PS417_23495 at 5086.180 kb on - strand, within PS417_23495 at 5086.180 kb on - strand, within PS417_23495 at 5086.180 kb on - strand, within PS417_23495 at 5086.413 kb on + strand at 5086.413 kb on + strand at 5086.414 kb on - strand at 5086.414 kb on - strand at 5086.414 kb on - strand at 5086.478 kb on + strand at 5086.478 kb on + strand, within PS417_23500 at 5086.478 kb on + strand, within PS417_23500 at 5086.478 kb on + strand, within PS417_23500 at 5086.479 kb on - strand, within PS417_23500 at 5086.479 kb on - strand, within PS417_23500 at 5086.479 kb on - strand, within PS417_23500 at 5086.596 kb on - strand, within PS417_23500 at 5086.952 kb on - strand, within PS417_23505 at 5086.952 kb on - strand, within PS417_23505 at 5087.186 kb on + strand, within PS417_23510 at 5087.187 kb on - strand, within PS417_23510 at 5087.192 kb on + strand, within PS417_23510 at 5087.192 kb on + strand, within PS417_23510
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 5 mg/mL (C) remove 5,085,075 - -0.4 5,085,096 + -1.1 5,085,098 + +0.6 5,085,099 - +0.6 5,085,351 + PS417_23490 0.31 +0.9 5,085,572 - PS417_23490 0.62 +0.2 5,085,790 + +0.1 5,085,790 + +0.2 5,085,790 + +0.5 5,085,790 + -0.5 5,085,791 - +3.2 5,085,831 + -0.6 5,085,838 + -0.8 5,085,838 + -1.1 5,085,839 - -0.1 5,085,860 + -0.8 5,085,860 + -1.1 5,085,860 + -0.1 5,085,860 + -1.0 5,085,860 + -0.5 5,085,861 - +0.6 5,085,861 - -0.1 5,085,861 - -0.1 5,086,068 + PS417_23495 0.37 -0.4 5,086,069 - PS417_23495 0.37 +0.9 5,086,122 + PS417_23495 0.47 +0.7 5,086,122 + PS417_23495 0.47 +0.3 5,086,123 - PS417_23495 0.47 +0.3 5,086,123 - PS417_23495 0.47 +0.5 5,086,123 - PS417_23495 0.47 -1.4 5,086,179 + PS417_23495 0.57 -0.7 5,086,179 + PS417_23495 0.57 +0.3 5,086,179 + PS417_23495 0.57 -0.0 5,086,180 - PS417_23495 0.57 -0.4 5,086,180 - PS417_23495 0.57 -0.3 5,086,180 - PS417_23495 0.57 +1.9 5,086,180 - PS417_23495 0.57 +0.3 5,086,413 + +1.0 5,086,413 + -1.6 5,086,414 - -0.7 5,086,414 - +0.0 5,086,414 - +1.3 5,086,478 + -0.1 5,086,478 + PS417_23500 0.16 -0.6 5,086,478 + PS417_23500 0.16 -0.2 5,086,478 + PS417_23500 0.16 -0.4 5,086,479 - PS417_23500 0.16 +0.1 5,086,479 - PS417_23500 0.16 -0.3 5,086,479 - PS417_23500 0.16 -0.1 5,086,596 - PS417_23500 0.48 -0.9 5,086,952 - PS417_23505 0.47 +0.0 5,086,952 - PS417_23505 0.47 -2.3 5,087,186 + PS417_23510 0.25 +0.0 5,087,187 - PS417_23510 0.25 -0.4 5,087,192 + PS417_23510 0.27 -0.7 5,087,192 + PS417_23510 0.27 -0.2
Or see this region's nucleotide sequence