Strain Fitness in Pseudomonas simiae WCS417 around PS417_16550

Experiment: Deoxyribonucleic from herring sperm 5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16540 and PS417_16545 overlap by 4 nucleotidesPS417_16545 and PS417_16550 are separated by 125 nucleotidesPS417_16550 and PS417_16555 are separated by 83 nucleotides PS417_16540: PS417_16540 - tRNA 2-thiouridylase, at 3,614,268 to 3,615,392 _16540 PS417_16545: PS417_16545 - DNA repair protein, at 3,615,389 to 3,616,012 _16545 PS417_16550: PS417_16550 - adenylosuccinate lyase, at 3,616,138 to 3,617,508 _16550 PS417_16555: PS417_16555 - cupin, at 3,617,592 to 3,618,758 _16555 Position (kb) 3616 3617 3618Strain fitness (log2 ratio) -2 -1 0 1at 3615.514 kb on - strand, within PS417_16545at 3615.795 kb on - strand, within PS417_16545at 3615.795 kb on - strand, within PS417_16545at 3616.019 kb on + strandat 3616.019 kb on + strandat 3616.092 kb on + strandat 3618.159 kb on + strand, within PS417_16555at 3618.213 kb on + strand, within PS417_16555at 3618.304 kb on - strand, within PS417_16555

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 5 mg/mL (C)
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3,615,514 - PS417_16545 0.20 -1.2
3,615,795 - PS417_16545 0.65 -1.9
3,615,795 - PS417_16545 0.65 -0.7
3,616,019 + -1.2
3,616,019 + -0.1
3,616,092 + -0.5
3,618,159 + PS417_16555 0.49 +0.8
3,618,213 + PS417_16555 0.53 +0.4
3,618,304 - PS417_16555 0.61 -1.3

Or see this region's nucleotide sequence