Experiment: Deoxyribonucleic from herring sperm 5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13670 and PS417_13675 are separated by 70 nucleotides PS417_13675 and PS417_13680 are separated by 65 nucleotides PS417_13680 and PS417_13685 are separated by 109 nucleotides PS417_13685 and PS417_13690 are separated by 114 nucleotides
PS417_13670: PS417_13670 - protease, at 3,007,733 to 3,009,712
_13670
PS417_13675: PS417_13675 - endoribonuclease L-PSP, at 3,009,783 to 3,010,163
_13675
PS417_13680: PS417_13680 - 3-oxoacyl-ACP synthase, at 3,010,229 to 3,011,497
_13680
PS417_13685: PS417_13685 - HxlR family transcriptional regulator, at 3,011,607 to 3,012,095
_13685
PS417_13690: PS417_13690 - chemotaxis protein, at 3,012,210 to 3,013,565
_13690
Position (kb)
3010
3011
3012 Strain fitness (log2 ratio)
-2
-1
0
1 at 3009.447 kb on + strand, within PS417_13670 at 3009.619 kb on - strand at 3009.754 kb on + strand at 3009.829 kb on - strand, within PS417_13675 at 3009.892 kb on + strand, within PS417_13675 at 3009.935 kb on - strand, within PS417_13675 at 3010.141 kb on + strand at 3010.142 kb on - strand at 3010.231 kb on - strand at 3010.334 kb on - strand at 3010.334 kb on - strand at 3010.572 kb on + strand, within PS417_13680 at 3010.914 kb on - strand, within PS417_13680 at 3010.914 kb on - strand, within PS417_13680 at 3011.022 kb on + strand, within PS417_13680 at 3011.022 kb on + strand, within PS417_13680 at 3011.023 kb on - strand, within PS417_13680 at 3011.023 kb on - strand, within PS417_13680 at 3011.173 kb on + strand, within PS417_13680 at 3011.491 kb on + strand at 3011.492 kb on - strand at 3011.535 kb on + strand at 3011.580 kb on + strand at 3011.765 kb on + strand, within PS417_13685 at 3011.817 kb on + strand, within PS417_13685 at 3011.844 kb on + strand, within PS417_13685 at 3011.844 kb on + strand, within PS417_13685 at 3011.844 kb on + strand, within PS417_13685 at 3011.844 kb on + strand, within PS417_13685 at 3011.845 kb on - strand, within PS417_13685 at 3011.845 kb on - strand, within PS417_13685 at 3012.007 kb on + strand, within PS417_13685 at 3012.105 kb on + strand at 3012.122 kb on + strand at 3012.171 kb on + strand at 3012.445 kb on - strand, within PS417_13690
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 5 mg/mL (C) remove 3,009,447 + PS417_13670 0.87 +0.2 3,009,619 - -0.3 3,009,754 + +0.8 3,009,829 - PS417_13675 0.12 -0.4 3,009,892 + PS417_13675 0.29 +0.0 3,009,935 - PS417_13675 0.40 -0.3 3,010,141 + -2.4 3,010,142 - -2.4 3,010,231 - +0.9 3,010,334 - +0.8 3,010,334 - +0.6 3,010,572 + PS417_13680 0.27 -0.5 3,010,914 - PS417_13680 0.54 -0.9 3,010,914 - PS417_13680 0.54 -0.7 3,011,022 + PS417_13680 0.62 +0.3 3,011,022 + PS417_13680 0.62 -0.3 3,011,023 - PS417_13680 0.63 -1.1 3,011,023 - PS417_13680 0.63 +0.1 3,011,173 + PS417_13680 0.74 +0.2 3,011,491 + -1.3 3,011,492 - -2.4 3,011,535 + +0.6 3,011,580 + -2.4 3,011,765 + PS417_13685 0.32 -0.2 3,011,817 + PS417_13685 0.43 +0.1 3,011,844 + PS417_13685 0.48 +0.8 3,011,844 + PS417_13685 0.48 -1.0 3,011,844 + PS417_13685 0.48 +1.0 3,011,844 + PS417_13685 0.48 +0.4 3,011,845 - PS417_13685 0.49 -0.2 3,011,845 - PS417_13685 0.49 +1.2 3,012,007 + PS417_13685 0.82 +1.0 3,012,105 + -0.0 3,012,122 + +0.3 3,012,171 + +0.4 3,012,445 - PS417_13690 0.17 -0.3
Or see this region's nucleotide sequence