Strain Fitness in Pseudomonas simiae WCS417 around PS417_06065

Experiment: Deoxyribonucleic from herring sperm 5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06060 and PS417_06065 are separated by 297 nucleotidesPS417_06065 and PS417_06070 are separated by 89 nucleotidesPS417_06070 and PS417_06075 are separated by 160 nucleotides PS417_06060: PS417_06060 - phosphoenolpyruvate carboxylase, at 1,343,624 to 1,346,251 _06060 PS417_06065: PS417_06065 - adenylate kinase, at 1,346,549 to 1,347,196 _06065 PS417_06070: PS417_06070 - peptidase M22, at 1,347,286 to 1,347,972 _06070 PS417_06075: PS417_06075 - hypothetical protein, at 1,348,133 to 1,348,423 _06075 Position (kb) 1346 1347 1348Strain fitness (log2 ratio) -2 -1 0 1 2at 1345.653 kb on - strand, within PS417_06060at 1345.653 kb on - strand, within PS417_06060at 1345.952 kb on + strand, within PS417_06060at 1346.010 kb on + strandat 1346.011 kb on - strandat 1346.111 kb on + strandat 1346.111 kb on + strandat 1346.112 kb on - strandat 1346.112 kb on - strandat 1346.273 kb on - strandat 1346.352 kb on + strandat 1346.353 kb on - strandat 1346.356 kb on + strandat 1346.356 kb on + strandat 1346.356 kb on + strandat 1346.356 kb on + strandat 1346.356 kb on + strandat 1346.363 kb on + strandat 1346.363 kb on + strandat 1346.421 kb on + strandat 1346.523 kb on + strandat 1346.523 kb on + strandat 1347.210 kb on + strandat 1347.210 kb on + strandat 1347.247 kb on + strandat 1347.249 kb on + strandat 1347.279 kb on + strandat 1348.050 kb on + strandat 1348.138 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 5 mg/mL (C)
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1,345,653 - PS417_06060 0.77 -0.7
1,345,653 - PS417_06060 0.77 -0.3
1,345,952 + PS417_06060 0.89 -0.4
1,346,010 + +0.9
1,346,011 - +0.9
1,346,111 + -1.3
1,346,111 + -0.0
1,346,112 - +0.9
1,346,112 - +0.3
1,346,273 - -0.3
1,346,352 + +0.6
1,346,353 - -0.1
1,346,356 + -0.5
1,346,356 + +0.1
1,346,356 + +2.3
1,346,356 + -0.5
1,346,356 + +0.2
1,346,363 + +0.2
1,346,363 + -1.9
1,346,421 + -0.0
1,346,523 + -0.2
1,346,523 + -1.1
1,347,210 + -0.5
1,347,210 + -0.7
1,347,247 + +1.0
1,347,249 + -0.5
1,347,279 + +1.4
1,348,050 + -0.9
1,348,138 + +0.6

Or see this region's nucleotide sequence