Strain Fitness in Escherichia coli BW25113 around b1681

Experiment: LB Aerobic with 2-Mercaptopyridine N-oxide 0.0000078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsufS and sufD overlap by 4 nucleotidessufD and sufC overlap by 26 nucleotidessufC and ynhE are separated by 9 nucleotides b1680: sufS - selenocysteine lyase (NCBI), at 1,757,327 to 1,758,547 sufS b1681: sufD - component of SufBCD complex (NCBI), at 1,758,544 to 1,759,815 sufD b1682: sufC - cysteine desulfurase ATPase component (NCBI), at 1,759,790 to 1,760,536 sufC b1683: ynhE - orf, hypothetical protein (VIMSS), at 1,760,546 to 1,762,033 ynhE Position (kb) 1758 1759 1760Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1757.561 kb on - strand, within sufSat 1757.561 kb on - strand, within sufSat 1757.579 kb on + strand, within sufSat 1757.579 kb on + strand, within sufSat 1757.646 kb on + strand, within sufSat 1757.646 kb on + strand, within sufSat 1757.680 kb on - strand, within sufSat 1757.680 kb on - strand, within sufSat 1757.706 kb on + strand, within sufSat 1757.706 kb on + strand, within sufSat 1757.765 kb on - strand, within sufSat 1757.775 kb on - strand, within sufSat 1757.775 kb on - strand, within sufSat 1758.135 kb on - strand, within sufSat 1758.135 kb on - strand, within sufSat 1758.168 kb on + strand, within sufSat 1758.607 kb on + strandat 1758.670 kb on - strandat 1758.690 kb on + strand, within sufDat 1758.690 kb on + strand, within sufDat 1758.821 kb on - strand, within sufDat 1759.046 kb on - strand, within sufDat 1759.046 kb on - strand, within sufDat 1759.054 kb on + strand, within sufDat 1759.134 kb on + strand, within sufDat 1759.288 kb on + strand, within sufDat 1759.296 kb on - strand, within sufDat 1759.345 kb on - strand, within sufDat 1759.576 kb on - strand, within sufDat 1759.578 kb on - strand, within sufDat 1759.578 kb on - strand, within sufDat 1759.590 kb on - strand, within sufDat 1759.590 kb on - strand, within sufDat 1759.624 kb on + strand, within sufDat 1759.624 kb on + strand, within sufDat 1759.806 kb on - strandat 1759.806 kb on - strandat 1759.812 kb on + strandat 1759.812 kb on + strandat 1759.877 kb on + strand, within sufCat 1759.902 kb on - strand, within sufCat 1759.902 kb on - strand, within sufCat 1759.907 kb on - strand, within sufCat 1759.944 kb on + strand, within sufCat 1759.944 kb on + strand, within sufCat 1759.999 kb on + strand, within sufCat 1760.009 kb on - strand, within sufCat 1760.777 kb on - strand, within ynhEat 1760.788 kb on - strand, within ynhE

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with 2-Mercaptopyridine N-oxide 0.0000078125 mM
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1,757,561 - sufS b1680 0.19 -1.4
1,757,561 - sufS b1680 0.19 -0.4
1,757,579 + sufS b1680 0.21 +2.1
1,757,579 + sufS b1680 0.21 -0.4
1,757,646 + sufS b1680 0.26 +0.6
1,757,646 + sufS b1680 0.26 -0.0
1,757,680 - sufS b1680 0.29 -1.4
1,757,680 - sufS b1680 0.29 -1.1
1,757,706 + sufS b1680 0.31 -1.2
1,757,706 + sufS b1680 0.31 -0.1
1,757,765 - sufS b1680 0.36 -1.6
1,757,775 - sufS b1680 0.37 -1.0
1,757,775 - sufS b1680 0.37 -1.0
1,758,135 - sufS b1680 0.66 +0.0
1,758,135 - sufS b1680 0.66 -0.6
1,758,168 + sufS b1680 0.69 -0.6
1,758,607 + -0.8
1,758,670 - -2.0
1,758,690 + sufD b1681 0.11 +0.6
1,758,690 + sufD b1681 0.11 +0.3
1,758,821 - sufD b1681 0.22 -0.7
1,759,046 - sufD b1681 0.39 +0.2
1,759,046 - sufD b1681 0.39 -0.9
1,759,054 + sufD b1681 0.40 -0.7
1,759,134 + sufD b1681 0.46 -2.2
1,759,288 + sufD b1681 0.58 -0.4
1,759,296 - sufD b1681 0.59 -1.1
1,759,345 - sufD b1681 0.63 -1.6
1,759,576 - sufD b1681 0.81 -0.8
1,759,578 - sufD b1681 0.81 -0.2
1,759,578 - sufD b1681 0.81 -0.6
1,759,590 - sufD b1681 0.82 -0.5
1,759,590 - sufD b1681 0.82 +0.1
1,759,624 + sufD b1681 0.85 -0.2
1,759,624 + sufD b1681 0.85 -2.0
1,759,806 - -2.9
1,759,806 - -1.6
1,759,812 + -1.4
1,759,812 + -0.0
1,759,877 + sufC b1682 0.12 -0.2
1,759,902 - sufC b1682 0.15 -0.6
1,759,902 - sufC b1682 0.15 -0.8
1,759,907 - sufC b1682 0.16 -2.3
1,759,944 + sufC b1682 0.21 -0.4
1,759,944 + sufC b1682 0.21 +6.4
1,759,999 + sufC b1682 0.28 -0.3
1,760,009 - sufC b1682 0.29 -0.8
1,760,777 - ynhE b1683 0.16 +0.0
1,760,788 - ynhE b1683 0.16 -1.8

Or see this region's nucleotide sequence