Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05015 and PS417_05020 are separated by 3 nucleotides PS417_05020 and PS417_05025 are separated by 12 nucleotides PS417_05025 and PS417_05030 are separated by 39 nucleotides
PS417_05015: PS417_05015 - homogentisate 1,2-dioxygenase, at 1,115,468 to 1,116,751
_05015
PS417_05020: PS417_05020 - fumarylacetoacetase, at 1,116,755 to 1,118,041
_05020
PS417_05025: PS417_05025 - maleylacetoacetate isomerase, at 1,118,054 to 1,118,695
_05025
PS417_05030: PS417_05030 - major facilitator transporter, at 1,118,735 to 1,120,102
_05030
Position (kb)
1116
1117
1118
1119 Strain fitness (log2 ratio)
-1
0
1 at 1115.793 kb on + strand, within PS417_05015 at 1115.794 kb on - strand, within PS417_05015 at 1115.843 kb on + strand, within PS417_05015 at 1115.843 kb on + strand, within PS417_05015 at 1115.933 kb on - strand, within PS417_05015 at 1115.933 kb on - strand, within PS417_05015 at 1116.349 kb on + strand at 1116.461 kb on + strand, within PS417_05015 at 1116.462 kb on - strand, within PS417_05015 at 1116.538 kb on + strand, within PS417_05015 at 1116.648 kb on + strand at 1116.698 kb on + strand at 1116.767 kb on - strand at 1117.217 kb on + strand, within PS417_05020 at 1117.754 kb on + strand, within PS417_05020 at 1118.040 kb on - strand at 1118.069 kb on + strand at 1118.070 kb on - strand at 1118.542 kb on + strand, within PS417_05025 at 1118.564 kb on + strand, within PS417_05025 at 1118.727 kb on + strand at 1118.844 kb on - strand at 1118.864 kb on + strand at 1118.865 kb on - strand at 1118.948 kb on - strand, within PS417_05030 at 1119.027 kb on - strand, within PS417_05030 at 1119.027 kb on - strand, within PS417_05030
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 1,115,793 + PS417_05015 0.25 -0.3 1,115,794 - PS417_05015 0.25 -0.1 1,115,843 + PS417_05015 0.29 -1.1 1,115,843 + PS417_05015 0.29 -0.1 1,115,933 - PS417_05015 0.36 +1.1 1,115,933 - PS417_05015 0.36 +0.7 1,116,349 + +0.1 1,116,461 + PS417_05015 0.77 -0.1 1,116,462 - PS417_05015 0.77 +0.7 1,116,538 + PS417_05015 0.83 -0.4 1,116,648 + +1.7 1,116,698 + -1.4 1,116,767 - -1.2 1,117,217 + PS417_05020 0.36 +0.1 1,117,754 + PS417_05020 0.78 +0.1 1,118,040 - +0.3 1,118,069 + +0.5 1,118,070 - +0.7 1,118,542 + PS417_05025 0.76 +0.4 1,118,564 + PS417_05025 0.79 +0.1 1,118,727 + +0.4 1,118,844 - +1.1 1,118,864 + +1.1 1,118,865 - -0.1 1,118,948 - PS417_05030 0.16 -0.3 1,119,027 - PS417_05030 0.21 -0.1 1,119,027 - PS417_05030 0.21 +0.0
Or see this region's nucleotide sequence