Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02780 and PS417_02785 are separated by 73 nucleotides PS417_02785 and PS417_02790 are separated by 113 nucleotides PS417_02790 and PS417_02795 overlap by 4 nucleotides PS417_02795 and PS417_02800 are separated by 5 nucleotides
PS417_02780: PS417_02780 - DNA-binding protein, at 632,255 to 633,199
_02780
PS417_02785: PS417_02785 - Urease (EC 3.5.1.5) <small>(from data)</small>, at 633,273 to 634,973
_02785
PS417_02790: PS417_02790 - urease subunit beta, at 635,087 to 635,392
_02790
PS417_02795: PS417_02795 - acetyltransferase, at 635,389 to 635,922
_02795
PS417_02800: PS417_02800 - acetyltransferase, at 635,928 to 636,440
_02800
Position (kb) 633
634
635 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 632.273 kb on + strand at 632.274 kb on - strand at 632.274 kb on - strand at 632.274 kb on - strand at 632.411 kb on + strand, within PS417_02780 at 632.411 kb on + strand, within PS417_02780 at 632.411 kb on + strand, within PS417_02780 at 632.412 kb on - strand, within PS417_02780 at 632.412 kb on - strand, within PS417_02780 at 632.633 kb on - strand, within PS417_02780 at 633.092 kb on + strand, within PS417_02780 at 633.093 kb on - strand, within PS417_02780 at 633.757 kb on + strand, within PS417_02785 at 633.758 kb on - strand, within PS417_02785 at 633.758 kb on - strand, within PS417_02785 at 633.769 kb on + strand, within PS417_02785 at 633.770 kb on - strand, within PS417_02785 at 633.857 kb on + strand, within PS417_02785 at 634.165 kb on + strand, within PS417_02785 at 634.166 kb on - strand, within PS417_02785 at 634.248 kb on + strand, within PS417_02785 at 634.262 kb on - strand, within PS417_02785 at 634.861 kb on + strand at 634.939 kb on + strand at 634.939 kb on + strand at 634.940 kb on - strand at 634.940 kb on - strand at 634.940 kb on - strand at 634.951 kb on + strand at 634.951 kb on + strand at 635.050 kb on + strand at 635.053 kb on + strand at 635.053 kb on + strand at 635.054 kb on - strand at 635.057 kb on + strand at 635.057 kb on + strand at 635.088 kb on + strand at 635.333 kb on - strand, within PS417_02790 at 635.377 kb on - strand at 635.417 kb on + strand at 635.418 kb on - strand at 635.485 kb on - strand, within PS417_02795 at 635.486 kb on + strand, within PS417_02795 at 635.486 kb on + strand, within PS417_02795 at 635.487 kb on - strand, within PS417_02795 at 635.501 kb on + strand, within PS417_02795 at 635.502 kb on - strand, within PS417_02795 at 635.540 kb on + strand, within PS417_02795 at 635.629 kb on + strand, within PS417_02795 at 635.629 kb on + strand, within PS417_02795 at 635.630 kb on - strand, within PS417_02795
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 632,273 + +2.7 632,274 - +0.1 632,274 - -0.3 632,274 - -0.2 632,411 + PS417_02780 0.17 +0.1 632,411 + PS417_02780 0.17 -0.2 632,411 + PS417_02780 0.17 +0.1 632,412 - PS417_02780 0.17 -0.5 632,412 - PS417_02780 0.17 -0.5 632,633 - PS417_02780 0.40 -0.1 633,092 + PS417_02780 0.89 -0.3 633,093 - PS417_02780 0.89 +0.3 633,757 + PS417_02785 0.28 +0.4 633,758 - PS417_02785 0.29 -1.5 633,758 - PS417_02785 0.29 -0.2 633,769 + PS417_02785 0.29 -0.2 633,770 - PS417_02785 0.29 -0.5 633,857 + PS417_02785 0.34 +0.1 634,165 + PS417_02785 0.52 -0.8 634,166 - PS417_02785 0.52 -1.3 634,248 + PS417_02785 0.57 +0.4 634,262 - PS417_02785 0.58 -1.0 634,861 + -0.8 634,939 + +0.6 634,939 + +0.0 634,940 - -0.6 634,940 - -2.8 634,940 - +0.1 634,951 + +0.6 634,951 + +0.5 635,050 + -0.2 635,053 + +0.2 635,053 + -0.9 635,054 - -0.3 635,057 + -0.3 635,057 + +0.5 635,088 + +1.5 635,333 - PS417_02790 0.80 -1.2 635,377 - -0.3 635,417 + +0.6 635,418 - -1.4 635,485 - PS417_02795 0.18 +1.7 635,486 + PS417_02795 0.18 +0.5 635,486 + PS417_02795 0.18 -1.2 635,487 - PS417_02795 0.18 -0.2 635,501 + PS417_02795 0.21 +0.1 635,502 - PS417_02795 0.21 +0.2 635,540 + PS417_02795 0.28 +0.8 635,629 + PS417_02795 0.45 +0.1 635,629 + PS417_02795 0.45 +0.5 635,630 - PS417_02795 0.45 +0.5
Or see this region's nucleotide sequence