Strain Fitness in Pseudomonas simiae WCS417 around PS417_26420

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_26415 and PS417_26420 are separated by 282 nucleotidesPS417_26420 and PS417_26425 are separated by 61 nucleotidesPS417_26425 and PS417_26430 are separated by 29 nucleotides PS417_26415: PS417_26415 - fructose-1,6-bisphosphate aldolase, at 5,712,957 to 5,714,021 _26415 PS417_26420: PS417_26420 - hypothetical protein, at 5,714,304 to 5,714,639 _26420 PS417_26425: PS417_26425 - hypothetical protein, at 5,714,701 to 5,714,928 _26425 PS417_26430: PS417_26430 - phosphoglycerate kinase, at 5,714,958 to 5,716,121 _26430 Position (kb) 5714 5715Strain fitness (log2 ratio) -1 0 1at 5714.092 kb on - strandat 5714.154 kb on + strandat 5714.154 kb on + strandat 5714.155 kb on - strandat 5714.238 kb on - strandat 5714.404 kb on + strand, within PS417_26420at 5714.405 kb on - strand, within PS417_26420at 5715.000 kb on + strandat 5715.073 kb on + strandat 5715.073 kb on + strandat 5715.351 kb on + strand, within PS417_26430

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
remove
5,714,092 - +0.4
5,714,154 + +0.4
5,714,154 + +1.1
5,714,155 - -1.0
5,714,238 - +0.1
5,714,404 + PS417_26420 0.30 -1.2
5,714,405 - PS417_26420 0.30 -1.5
5,715,000 + -0.4
5,715,073 + +0.5
5,715,073 + -1.6
5,715,351 + PS417_26430 0.34 -1.5

Or see this region's nucleotide sequence