Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25760 and PS417_25765 are separated by 214 nucleotides PS417_25765 and PS417_25770 are separated by 18 nucleotides PS417_25770 and PS417_25775 are separated by 77 nucleotides
PS417_25760: PS417_25760 - spermidine/putrescine ABC transporter ATP-binding protein, at 5,561,056 to 5,562,168
_25760
PS417_25765: PS417_25765 - transcriptional regulator, at 5,562,383 to 5,563,012
_25765
PS417_25770: PS417_25770 - ABC transporter substrate-binding protein, at 5,563,031 to 5,565,025
_25770
PS417_25775: PS417_25775 - lipoprotein, at 5,565,103 to 5,566,077
_25775
Position (kb) 5563
5564
5565
5566 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5562.111 kb on - strand at 5562.169 kb on - strand at 5562.169 kb on - strand at 5562.208 kb on + strand at 5562.369 kb on - strand at 5562.384 kb on + strand at 5562.385 kb on - strand at 5562.385 kb on - strand at 5562.409 kb on - strand at 5562.436 kb on + strand at 5562.642 kb on + strand, within PS417_25765 at 5562.643 kb on - strand, within PS417_25765 at 5563.033 kb on - strand at 5563.033 kb on - strand at 5563.243 kb on + strand, within PS417_25770 at 5563.244 kb on - strand at 5563.244 kb on - strand, within PS417_25770 at 5563.472 kb on + strand, within PS417_25770 at 5563.472 kb on + strand, within PS417_25770 at 5563.473 kb on - strand, within PS417_25770 at 5563.744 kb on - strand, within PS417_25770 at 5563.869 kb on - strand, within PS417_25770 at 5564.229 kb on + strand, within PS417_25770 at 5564.465 kb on + strand, within PS417_25770 at 5564.466 kb on - strand, within PS417_25770 at 5564.517 kb on + strand, within PS417_25770 at 5564.532 kb on + strand, within PS417_25770 at 5564.647 kb on + strand, within PS417_25770 at 5564.647 kb on + strand, within PS417_25770 at 5564.647 kb on + strand, within PS417_25770 at 5564.648 kb on - strand, within PS417_25770 at 5564.649 kb on + strand, within PS417_25770 at 5564.649 kb on + strand, within PS417_25770 at 5564.649 kb on + strand, within PS417_25770 at 5564.650 kb on - strand, within PS417_25770 at 5564.650 kb on - strand, within PS417_25770 at 5564.650 kb on - strand, within PS417_25770 at 5564.650 kb on - strand, within PS417_25770 at 5564.650 kb on - strand, within PS417_25770 at 5564.873 kb on + strand at 5565.067 kb on + strand at 5565.372 kb on + strand, within PS417_25775 at 5565.377 kb on + strand, within PS417_25775 at 5565.417 kb on + strand, within PS417_25775 at 5565.418 kb on - strand, within PS417_25775 at 5565.492 kb on + strand at 5565.493 kb on - strand, within PS417_25775 at 5565.509 kb on + strand, within PS417_25775 at 5565.509 kb on + strand, within PS417_25775 at 5565.726 kb on - strand at 5565.849 kb on - strand, within PS417_25775 at 5565.849 kb on - strand, within PS417_25775 at 5565.849 kb on - strand, within PS417_25775 at 5565.895 kb on + strand, within PS417_25775 at 5565.896 kb on - strand, within PS417_25775 at 5565.971 kb on - strand, within PS417_25775
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 5,562,111 - +0.9 5,562,169 - +1.1 5,562,169 - -2.2 5,562,208 + -2.3 5,562,369 - -0.1 5,562,384 + +0.3 5,562,385 - -0.3 5,562,385 - +0.4 5,562,409 - -1.4 5,562,436 + +1.1 5,562,642 + PS417_25765 0.41 -0.4 5,562,643 - PS417_25765 0.41 -0.2 5,563,033 - -0.3 5,563,033 - -0.4 5,563,243 + PS417_25770 0.11 -0.6 5,563,244 - +2.1 5,563,244 - PS417_25770 0.11 -1.4 5,563,472 + PS417_25770 0.22 -0.2 5,563,472 + PS417_25770 0.22 -1.0 5,563,473 - PS417_25770 0.22 +0.2 5,563,744 - PS417_25770 0.36 -0.0 5,563,869 - PS417_25770 0.42 +0.9 5,564,229 + PS417_25770 0.60 -1.1 5,564,465 + PS417_25770 0.72 -1.5 5,564,466 - PS417_25770 0.72 -0.8 5,564,517 + PS417_25770 0.74 -0.8 5,564,532 + PS417_25770 0.75 -0.1 5,564,647 + PS417_25770 0.81 +0.2 5,564,647 + PS417_25770 0.81 -0.9 5,564,647 + PS417_25770 0.81 -0.8 5,564,648 - PS417_25770 0.81 -0.3 5,564,649 + PS417_25770 0.81 -0.4 5,564,649 + PS417_25770 0.81 -0.4 5,564,649 + PS417_25770 0.81 +0.1 5,564,650 - PS417_25770 0.81 -1.2 5,564,650 - PS417_25770 0.81 -1.6 5,564,650 - PS417_25770 0.81 +0.2 5,564,650 - PS417_25770 0.81 -0.3 5,564,650 - PS417_25770 0.81 -1.1 5,564,873 + +0.1 5,565,067 + -2.5 5,565,372 + PS417_25775 0.28 +2.4 5,565,377 + PS417_25775 0.28 -1.5 5,565,417 + PS417_25775 0.32 +0.5 5,565,418 - PS417_25775 0.32 +0.5 5,565,492 + -0.9 5,565,493 - PS417_25775 0.40 +1.3 5,565,509 + PS417_25775 0.42 +0.9 5,565,509 + PS417_25775 0.42 -1.1 5,565,726 - +1.1 5,565,849 - PS417_25775 0.77 -0.5 5,565,849 - PS417_25775 0.77 -0.2 5,565,849 - PS417_25775 0.77 +0.0 5,565,895 + PS417_25775 0.81 +0.5 5,565,896 - PS417_25775 0.81 -0.2 5,565,971 - PS417_25775 0.89 -0.3
Or see this region's nucleotide sequence