Strain Fitness in Pseudomonas simiae WCS417 around PS417_24740

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24730 and PS417_24735 are separated by 9 nucleotidesPS417_24735 and PS417_24740 are separated by 69 nucleotidesPS417_24740 and PS417_24745 overlap by 1 nucleotides PS417_24730: PS417_24730 - 50S rRNA methyltransferase, at 5,366,122 to 5,366,589 _24730 PS417_24735: PS417_24735 - ribosome-associated protein IOJAP, at 5,366,599 to 5,367,093 _24735 PS417_24740: PS417_24740 - nicotinate-nucleotide adenylyltransferase, at 5,367,163 to 5,367,807 _24740 PS417_24745: PS417_24745 - gamma-glutamyl phosphate reductase, at 5,367,807 to 5,369,072 _24745 Position (kb) 5367 5368Strain fitness (log2 ratio) -3 -2 -1 0 1at 5366.166 kb on - strandat 5367.114 kb on - strandat 5367.114 kb on - strandat 5367.114 kb on - strandat 5367.114 kb on - strandat 5368.133 kb on - strand, within PS417_24745at 5368.370 kb on - strand, within PS417_24745at 5368.370 kb on - strand, within PS417_24745at 5368.370 kb on - strand, within PS417_24745at 5368.501 kb on - strand, within PS417_24745

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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5,366,166 - -0.6
5,367,114 - -0.5
5,367,114 - -0.6
5,367,114 - -0.1
5,367,114 - +1.2
5,368,133 - PS417_24745 0.26 -3.0
5,368,370 - PS417_24745 0.44 -2.0
5,368,370 - PS417_24745 0.44 -1.4
5,368,370 - PS417_24745 0.44 -1.2
5,368,501 - PS417_24745 0.55 +1.2

Or see this region's nucleotide sequence