Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19425 and PS417_19430 are separated by 124 nucleotides PS417_19430 and PS417_19435 are separated by 51 nucleotides PS417_19435 and PS417_19440 are separated by 182 nucleotides
PS417_19425: PS417_19425 - allantoicase, at 4,212,136 to 4,213,131
_19425
PS417_19430: PS417_19430 - ureidoglycolate hydrolase, at 4,213,256 to 4,213,759
_19430
PS417_19435: PS417_19435 - urate hydroxylase (1.7.3.3) <small>(from data)</small>, at 4,213,811 to 4,215,112
_19435
PS417_19440: PS417_19440 - purine permease, at 4,215,295 to 4,216,641
_19440
Position (kb) 4213
4214
4215
4216 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4213.215 kb on - strand at 4213.243 kb on + strand at 4213.609 kb on + strand, within PS417_19430 at 4213.614 kb on - strand, within PS417_19430 at 4213.699 kb on + strand, within PS417_19430 at 4213.757 kb on + strand at 4213.757 kb on + strand at 4213.757 kb on + strand at 4213.804 kb on - strand at 4213.988 kb on + strand, within PS417_19435 at 4213.988 kb on + strand, within PS417_19435 at 4213.989 kb on - strand, within PS417_19435 at 4214.061 kb on - strand, within PS417_19435 at 4214.124 kb on - strand, within PS417_19435 at 4214.124 kb on - strand, within PS417_19435 at 4214.179 kb on - strand, within PS417_19435 at 4214.207 kb on + strand, within PS417_19435 at 4214.328 kb on - strand at 4214.486 kb on + strand, within PS417_19435 at 4214.486 kb on + strand, within PS417_19435 at 4214.486 kb on + strand, within PS417_19435 at 4214.486 kb on + strand, within PS417_19435 at 4214.487 kb on - strand, within PS417_19435 at 4214.487 kb on - strand, within PS417_19435 at 4214.540 kb on + strand, within PS417_19435 at 4214.599 kb on - strand, within PS417_19435 at 4215.139 kb on + strand at 4215.202 kb on - strand at 4215.397 kb on + strand at 4215.397 kb on + strand at 4215.398 kb on - strand at 4215.398 kb on - strand at 4215.820 kb on + strand, within PS417_19440 at 4215.821 kb on - strand, within PS417_19440 at 4216.020 kb on + strand, within PS417_19440 at 4216.021 kb on - strand, within PS417_19440
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 4,213,215 - -1.7 4,213,243 + +0.4 4,213,609 + PS417_19430 0.70 -3.0 4,213,614 - PS417_19430 0.71 -1.0 4,213,699 + PS417_19430 0.88 -2.1 4,213,757 + +0.7 4,213,757 + -0.7 4,213,757 + -0.4 4,213,804 - -1.6 4,213,988 + PS417_19435 0.14 +0.9 4,213,988 + PS417_19435 0.14 -3.7 4,213,989 - PS417_19435 0.14 -2.1 4,214,061 - PS417_19435 0.19 -0.5 4,214,124 - PS417_19435 0.24 +2.0 4,214,124 - PS417_19435 0.24 -2.6 4,214,179 - PS417_19435 0.28 -2.3 4,214,207 + PS417_19435 0.30 -0.8 4,214,328 - -1.5 4,214,486 + PS417_19435 0.52 -1.6 4,214,486 + PS417_19435 0.52 -2.0 4,214,486 + PS417_19435 0.52 -0.2 4,214,486 + PS417_19435 0.52 -0.8 4,214,487 - PS417_19435 0.52 -1.0 4,214,487 - PS417_19435 0.52 -2.3 4,214,540 + PS417_19435 0.56 -1.8 4,214,599 - PS417_19435 0.61 -2.4 4,215,139 + -0.1 4,215,202 - +1.2 4,215,397 + +0.0 4,215,397 + -0.0 4,215,398 - +0.0 4,215,398 - +0.4 4,215,820 + PS417_19440 0.39 -0.4 4,215,821 - PS417_19440 0.39 -0.5 4,216,020 + PS417_19440 0.54 -0.5 4,216,021 - PS417_19440 0.54 +0.4
Or see this region's nucleotide sequence