Strain Fitness in Pseudomonas simiae WCS417 around PS417_09800
Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Deoxyribonucleic from herring sperm 10 mg/mL (C) |
|---|---|---|---|---|---|
| remove | |||||
| 2,124,670 | + | PS417_09795 | 0.55 | -0.2 | |
| 2,124,670 | + | PS417_09795 | 0.55 | -0.1 | |
| 2,124,670 | + | PS417_09795 | 0.55 | +0.3 | |
| 2,124,749 | + | PS417_09795 | 0.59 | +0.7 | |
| 2,124,749 | + | PS417_09795 | 0.59 | -0.1 | |
| 2,124,765 | - | PS417_09795 | 0.60 | +0.3 | |
| 2,124,770 | + | PS417_09795 | 0.60 | -0.4 | |
| 2,125,196 | + | PS417_09795 | 0.80 | -0.5 | |
| 2,125,197 | - | PS417_09795 | 0.80 | +0.9 | |
| 2,125,197 | - | PS417_09795 | 0.80 | +0.8 | |
| 2,125,221 | + | PS417_09795 | 0.81 | -0.8 | |
| 2,125,704 | - | +1.1 | |||
| 2,125,737 | - | -0.5 | |||
| 2,126,055 | + | PS417_09800 | 0.33 | -0.2 | |
| 2,126,123 | + | PS417_09800 | 0.39 | +1.1 | |
| 2,126,275 | - | PS417_09800 | 0.51 | -1.2 | |
| 2,126,330 | + | PS417_09800 | 0.56 | -1.1 | |
| 2,126,957 | + | +0.9 | |||
| 2,126,958 | - | +0.3 | |||
| 2,127,061 | - | PS417_09805 | 0.13 | -1.1 | |
| 2,127,218 | + | PS417_09805 | 0.26 | +0.4 | |
| 2,127,219 | - | PS417_09805 | 0.26 | -0.2 | |
| 2,127,358 | + | PS417_09805 | 0.38 | -0.1 | |
| 2,127,666 | - | PS417_09805 | 0.63 | +0.2 | |
| 2,127,848 | + | PS417_09805 | 0.78 | +1.1 | |
| 2,127,849 | - | PS417_09805 | 0.78 | -1.1 | |
| 2,127,849 | - | PS417_09805 | 0.78 | +0.7 | |
| 2,127,849 | - | PS417_09805 | 0.78 | +0.3 |
Or see this region's nucleotide sequence