Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24455 and PS417_24460 are separated by 178 nucleotides PS417_24460 and PS417_24465 are separated by 83 nucleotides PS417_24465 and PS417_24470 are separated by 0 nucleotides
PS417_24455: PS417_24455 - membrane protein, at 5,309,517 to 5,310,395
_24455
PS417_24460: PS417_24460 - hypothetical protein, at 5,310,574 to 5,310,990
_24460
PS417_24465: PS417_24465 - metallopeptidase, at 5,311,074 to 5,311,961
_24465
PS417_24470: PS417_24470 - hypothetical protein, at 5,311,962 to 5,312,933
_24470
Position (kb) 5311
5312 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5310.100 kb on + strand, within PS417_24455 at 5310.101 kb on - strand, within PS417_24455 at 5310.157 kb on - strand, within PS417_24455 at 5310.290 kb on - strand, within PS417_24455 at 5310.440 kb on + strand at 5310.499 kb on + strand at 5310.573 kb on + strand at 5310.573 kb on + strand at 5310.573 kb on + strand at 5310.574 kb on - strand at 5310.574 kb on - strand at 5310.784 kb on + strand, within PS417_24460 at 5310.784 kb on + strand, within PS417_24460 at 5310.784 kb on + strand, within PS417_24460 at 5310.785 kb on - strand, within PS417_24460 at 5310.976 kb on + strand at 5310.988 kb on + strand at 5311.009 kb on - strand at 5311.015 kb on - strand at 5311.015 kb on - strand at 5311.015 kb on - strand at 5311.017 kb on + strand at 5311.018 kb on - strand at 5311.018 kb on - strand at 5311.018 kb on - strand at 5311.018 kb on - strand at 5311.078 kb on + strand at 5311.401 kb on + strand, within PS417_24465 at 5311.401 kb on + strand, within PS417_24465 at 5311.401 kb on + strand, within PS417_24465 at 5311.402 kb on - strand, within PS417_24465 at 5311.506 kb on + strand, within PS417_24465 at 5311.506 kb on + strand, within PS417_24465 at 5311.507 kb on - strand, within PS417_24465 at 5311.575 kb on + strand, within PS417_24465 at 5311.959 kb on + strand at 5311.960 kb on - strand at 5311.960 kb on - strand at 5312.032 kb on + strand at 5312.173 kb on - strand, within PS417_24470 at 5312.173 kb on - strand, within PS417_24470 at 5312.405 kb on - strand, within PS417_24470 at 5312.527 kb on - strand, within PS417_24470 at 5312.527 kb on - strand, within PS417_24470 at 5312.556 kb on + strand, within PS417_24470 at 5312.557 kb on - strand, within PS417_24470 at 5312.557 kb on - strand, within PS417_24470 at 5312.557 kb on - strand, within PS417_24470 at 5312.685 kb on + strand, within PS417_24470 at 5312.685 kb on + strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.707 kb on - strand, within PS417_24470 at 5312.707 kb on - strand, within PS417_24470 at 5312.808 kb on + strand, within PS417_24470 at 5312.808 kb on + strand at 5312.809 kb on - strand, within PS417_24470 at 5312.809 kb on - strand, within PS417_24470 at 5312.817 kb on + strand, within PS417_24470 at 5312.897 kb on + strand at 5312.897 kb on + strand at 5312.898 kb on - strand at 5312.920 kb on + strand at 5312.921 kb on - strand at 5312.921 kb on - strand at 5312.921 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C) remove 5,310,100 + PS417_24455 0.66 -0.0 5,310,101 - PS417_24455 0.66 -1.4 5,310,157 - PS417_24455 0.73 -0.1 5,310,290 - PS417_24455 0.88 -0.6 5,310,440 + +0.2 5,310,499 + +0.5 5,310,573 + +0.6 5,310,573 + +0.3 5,310,573 + +0.4 5,310,574 - -0.6 5,310,574 - -0.4 5,310,784 + PS417_24460 0.50 -1.0 5,310,784 + PS417_24460 0.50 -1.4 5,310,784 + PS417_24460 0.50 +0.8 5,310,785 - PS417_24460 0.51 -1.6 5,310,976 + +0.2 5,310,988 + -0.9 5,311,009 - -0.6 5,311,015 - +1.4 5,311,015 - -0.4 5,311,015 - +0.4 5,311,017 + +2.0 5,311,018 - -1.3 5,311,018 - -0.6 5,311,018 - -0.8 5,311,018 - -2.1 5,311,078 + -3.0 5,311,401 + PS417_24465 0.37 -1.7 5,311,401 + PS417_24465 0.37 -0.8 5,311,401 + PS417_24465 0.37 -0.7 5,311,402 - PS417_24465 0.37 -0.6 5,311,506 + PS417_24465 0.49 +0.0 5,311,506 + PS417_24465 0.49 -0.2 5,311,507 - PS417_24465 0.49 -0.9 5,311,575 + PS417_24465 0.56 -2.2 5,311,959 + -0.5 5,311,960 - +0.4 5,311,960 - -0.9 5,312,032 + +0.0 5,312,173 - PS417_24470 0.22 +0.3 5,312,173 - PS417_24470 0.22 -1.3 5,312,405 - PS417_24470 0.46 -0.8 5,312,527 - PS417_24470 0.58 +0.3 5,312,527 - PS417_24470 0.58 +0.1 5,312,556 + PS417_24470 0.61 -0.3 5,312,557 - PS417_24470 0.61 -0.3 5,312,557 - PS417_24470 0.61 -0.4 5,312,557 - PS417_24470 0.61 -0.2 5,312,685 + PS417_24470 0.74 +2.1 5,312,685 + PS417_24470 0.74 +1.0 5,312,686 - PS417_24470 0.74 +0.2 5,312,686 - PS417_24470 0.74 -0.2 5,312,686 - PS417_24470 0.74 -0.2 5,312,686 - PS417_24470 0.74 +0.1 5,312,686 - PS417_24470 0.74 -2.2 5,312,686 - PS417_24470 0.74 -0.2 5,312,686 - PS417_24470 0.74 -0.7 5,312,686 - PS417_24470 0.74 +0.1 5,312,686 - PS417_24470 0.74 +0.1 5,312,707 - PS417_24470 0.77 -1.5 5,312,707 - PS417_24470 0.77 +0.6 5,312,808 + PS417_24470 0.87 +0.4 5,312,808 + +1.0 5,312,809 - PS417_24470 0.87 +0.3 5,312,809 - PS417_24470 0.87 -0.4 5,312,817 + PS417_24470 0.88 +1.8 5,312,897 + -0.3 5,312,897 + -3.1 5,312,898 - +1.1 5,312,920 + -0.3 5,312,921 - -0.6 5,312,921 - +1.2 5,312,921 - -1.3
Or see this region's nucleotide sequence