Strain Fitness in Pseudomonas simiae WCS417 around PS417_01670

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01665 and PS417_01670 are separated by 206 nucleotidesPS417_01670 and PS417_01675 are separated by 238 nucleotides PS417_01665: PS417_01665 - GTP-binding protein TypA, at 365,500 to 367,320 _01665 PS417_01670: PS417_01670 - Fe-S-oxidoreductase, at 367,527 to 367,961 _01670 PS417_01675: PS417_01675 - maltodextrin phosphorylase, at 368,200 to 370,650 _01675 Position (kb) 367 368Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 367.323 kb on + strandat 367.536 kb on - strandat 367.582 kb on + strand, within PS417_01670at 367.652 kb on + strand, within PS417_01670at 367.652 kb on + strand, within PS417_01670at 367.653 kb on - strand, within PS417_01670at 367.653 kb on - strand, within PS417_01670at 367.653 kb on - strand, within PS417_01670at 367.671 kb on - strand, within PS417_01670at 367.817 kb on + strand, within PS417_01670at 367.818 kb on - strand, within PS417_01670at 367.818 kb on - strand, within PS417_01670at 367.892 kb on + strand, within PS417_01670at 367.892 kb on + strand, within PS417_01670at 367.893 kb on - strand, within PS417_01670at 367.904 kb on - strand, within PS417_01670at 368.062 kb on - strandat 368.104 kb on + strandat 368.105 kb on - strandat 368.138 kb on + strandat 368.158 kb on - strandat 368.164 kb on + strandat 368.165 kb on - strandat 368.177 kb on + strandat 368.178 kb on - strandat 368.178 kb on - strandat 368.178 kb on - strandat 368.268 kb on + strandat 368.268 kb on + strandat 368.386 kb on + strandat 368.410 kb on + strandat 368.411 kb on - strandat 368.450 kb on - strand, within PS417_01675at 368.854 kb on + strand, within PS417_01675

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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367,323 + -0.5
367,536 - +1.5
367,582 + PS417_01670 0.13 -1.5
367,652 + PS417_01670 0.29 -0.2
367,652 + PS417_01670 0.29 -3.2
367,653 - PS417_01670 0.29 -0.0
367,653 - PS417_01670 0.29 -0.2
367,653 - PS417_01670 0.29 -0.5
367,671 - PS417_01670 0.33 -0.6
367,817 + PS417_01670 0.67 -0.8
367,818 - PS417_01670 0.67 -0.6
367,818 - PS417_01670 0.67 +0.0
367,892 + PS417_01670 0.84 +0.3
367,892 + PS417_01670 0.84 -0.7
367,893 - PS417_01670 0.84 -0.2
367,904 - PS417_01670 0.87 +0.3
368,062 - +2.3
368,104 + +0.2
368,105 - +1.6
368,138 + -0.5
368,158 - +0.5
368,164 + -0.3
368,165 - +0.4
368,177 + +0.4
368,178 - +0.0
368,178 - -0.3
368,178 - +1.3
368,268 + +0.4
368,268 + -1.0
368,386 + -0.1
368,410 + -1.0
368,411 - +0.2
368,450 - PS417_01675 0.10 -0.3
368,854 + PS417_01675 0.27 +0.3

Or see this region's nucleotide sequence