Strain Fitness in Pseudomonas simiae WCS417 around PS417_10520

Experiment: 2-Deoxy-D-ribonic lithium salt 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10515 and PS417_10520 are separated by 11 nucleotidesPS417_10520 and PS417_10525 are separated by 34 nucleotidesPS417_10525 and PS417_10530 are separated by 133 nucleotides PS417_10515: PS417_10515 - acetyl-CoA acetyltransferase, at 2,243,843 to 2,245,024 _10515 PS417_10520: PS417_10520 - succinyl-CoA:3-ketoacid-CoA transferase, at 2,245,036 to 2,245,695 _10520 PS417_10525: PS417_10525 - succinyl-CoA:3-ketoacid-CoA transferase, at 2,245,730 to 2,246,428 _10525 PS417_10530: PS417_10530 - LysR family transcriptional regulator, at 2,246,562 to 2,247,467 _10530 Position (kb) 2245 2246Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2244.174 kb on - strand, within PS417_10515at 2244.174 kb on - strand, within PS417_10515at 2244.657 kb on + strand, within PS417_10515at 2244.657 kb on + strand, within PS417_10515at 2244.657 kb on + strand, within PS417_10515at 2244.657 kb on + strand, within PS417_10515at 2244.858 kb on - strand, within PS417_10515at 2245.184 kb on - strand, within PS417_10520at 2245.370 kb on - strand, within PS417_10520at 2245.370 kb on - strand, within PS417_10520at 2245.370 kb on - strand, within PS417_10520at 2245.394 kb on - strand, within PS417_10520at 2245.708 kb on + strandat 2245.731 kb on + strandat 2245.732 kb on - strandat 2245.794 kb on + strandat 2246.489 kb on - strandat 2246.571 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-ribonic lithium salt 10 mM (C)
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2,244,174 - PS417_10515 0.28 -3.9
2,244,174 - PS417_10515 0.28 -2.0
2,244,657 + PS417_10515 0.69 -3.0
2,244,657 + PS417_10515 0.69 -1.9
2,244,657 + PS417_10515 0.69 -0.0
2,244,657 + PS417_10515 0.69 -1.5
2,244,858 - PS417_10515 0.86 -2.7
2,245,184 - PS417_10520 0.22 -1.8
2,245,370 - PS417_10520 0.51 -2.1
2,245,370 - PS417_10520 0.51 -0.0
2,245,370 - PS417_10520 0.51 -4.4
2,245,394 - PS417_10520 0.54 -3.3
2,245,708 + +1.0
2,245,731 + -3.7
2,245,732 - -1.6
2,245,794 + +1.0
2,246,489 - -0.6
2,246,571 - +0.4

Or see this region's nucleotide sequence