Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03910 and PS417_03915 are separated by 48 nucleotides PS417_03915 and PS417_03920 are separated by 145 nucleotides PS417_03920 and PS417_03925 are separated by 47 nucleotides PS417_03925 and PS417_03930 are separated by 191 nucleotides
PS417_03910: PS417_03910 - pilus assembly protein, at 874,170 to 875,570
_03910
PS417_03915: PS417_03915 - tRNA-Thr, at 875,619 to 875,691
_03915
PS417_03920: PS417_03920 - dephospho-CoA kinase, at 875,837 to 876,142
_03920
PS417_03925: PS417_03925 - nicotinate-nucleotide pyrophosphorylase, at 876,190 to 877,038
_03925
PS417_03930: PS417_03930 - thymidine phosphorylase, at 877,230 to 879,353
_03930
Position (kb) 876
877
878 Strain fitness (log2 ratio) -2
-1
0
1
2 at 875.210 kb on + strand, within PS417_03910 at 875.318 kb on + strand, within PS417_03910 at 875.319 kb on - strand, within PS417_03910 at 875.319 kb on - strand, within PS417_03910 at 875.372 kb on - strand, within PS417_03910 at 875.372 kb on - strand, within PS417_03910 at 875.505 kb on + strand at 875.604 kb on + strand at 875.604 kb on + strand at 875.627 kb on - strand, within PS417_03915 at 875.627 kb on - strand, within PS417_03915 at 875.627 kb on - strand, within PS417_03915 at 875.711 kb on - strand at 875.780 kb on - strand at 875.826 kb on - strand at 875.892 kb on - strand, within PS417_03920 at 876.000 kb on - strand, within PS417_03920 at 876.026 kb on + strand, within PS417_03920 at 876.026 kb on + strand, within PS417_03920 at 876.027 kb on - strand, within PS417_03920 at 876.073 kb on + strand, within PS417_03920 at 876.114 kb on - strand at 876.257 kb on + strand at 876.257 kb on + strand at 876.257 kb on + strand at 876.258 kb on - strand at 876.258 kb on - strand at 876.258 kb on - strand at 876.258 kb on - strand at 876.360 kb on + strand, within PS417_03925 at 876.361 kb on - strand, within PS417_03925 at 876.548 kb on + strand, within PS417_03925 at 876.548 kb on + strand, within PS417_03925 at 876.549 kb on - strand, within PS417_03925 at 876.594 kb on - strand, within PS417_03925 at 877.071 kb on - strand at 877.110 kb on + strand at 877.110 kb on + strand at 877.160 kb on - strand at 877.304 kb on - strand at 877.430 kb on + strand at 877.430 kb on + strand at 877.430 kb on + strand at 877.430 kb on + strand at 877.617 kb on - strand, within PS417_03930 at 877.830 kb on + strand, within PS417_03930
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 875,210 + PS417_03910 0.74 -1.1 875,318 + PS417_03910 0.82 -0.4 875,319 - PS417_03910 0.82 +1.1 875,319 - PS417_03910 0.82 +1.0 875,372 - PS417_03910 0.86 -0.0 875,372 - PS417_03910 0.86 -0.5 875,505 + +1.3 875,604 + -0.1 875,604 + -0.1 875,627 - PS417_03915 0.11 +1.3 875,627 - PS417_03915 0.11 -0.7 875,627 - PS417_03915 0.11 -2.1 875,711 - -0.6 875,780 - +1.6 875,826 - +0.7 875,892 - PS417_03920 0.18 -2.3 876,000 - PS417_03920 0.53 -0.3 876,026 + PS417_03920 0.62 -0.4 876,026 + PS417_03920 0.62 +0.4 876,027 - PS417_03920 0.62 +0.2 876,073 + PS417_03920 0.77 +2.7 876,114 - +0.3 876,257 + -0.1 876,257 + -2.2 876,257 + -0.7 876,258 - -0.5 876,258 - -0.9 876,258 - -1.6 876,258 - -1.6 876,360 + PS417_03925 0.20 -0.5 876,361 - PS417_03925 0.20 -1.2 876,548 + PS417_03925 0.42 -1.7 876,548 + PS417_03925 0.42 +0.3 876,549 - PS417_03925 0.42 -1.0 876,594 - PS417_03925 0.48 -1.9 877,071 - -0.5 877,110 + -1.0 877,110 + +1.7 877,160 - +1.3 877,304 - -0.4 877,430 + -1.0 877,430 + +0.8 877,430 + -2.4 877,430 + -1.2 877,617 - PS417_03930 0.18 -1.6 877,830 + PS417_03930 0.28 -0.8
Or see this region's nucleotide sequence