Strain Fitness in Pseudomonas simiae WCS417 around PS417_00335

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00325 and PS417_00330 overlap by 35 nucleotidesPS417_00330 and PS417_00335 are separated by 10 nucleotidesPS417_00335 and PS417_00340 overlap by 13 nucleotidesPS417_00340 and PS417_00345 overlap by 4 nucleotides PS417_00325: PS417_00325 - hypothetical protein, at 63,613 to 64,377 _00325 PS417_00330: PS417_00330 - hypothetical protein, at 64,343 to 64,927 _00330 PS417_00335: PS417_00335 - cytochrome B561, at 64,938 to 66,017 _00335 PS417_00340: PS417_00340 - protoheme IX farnesyltransferase, at 66,005 to 66,904 _00340 PS417_00345: PS417_00345 - copper-binding protein, at 66,901 to 67,536 _00345 Position (kb) 64 65 66 67Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 64.051 kb on + strand, within PS417_00325at 64.052 kb on - strand, within PS417_00325at 64.052 kb on - strand, within PS417_00325at 64.174 kb on + strand, within PS417_00325at 64.303 kb on + strandat 64.303 kb on + strandat 64.303 kb on + strandat 64.303 kb on + strandat 64.310 kb on - strandat 64.463 kb on + strand, within PS417_00330at 64.463 kb on + strandat 64.463 kb on + strand, within PS417_00330at 64.464 kb on - strand, within PS417_00330at 64.499 kb on + strand, within PS417_00330at 64.499 kb on + strand, within PS417_00330at 64.542 kb on + strand, within PS417_00330at 64.543 kb on - strand, within PS417_00330at 64.543 kb on - strand, within PS417_00330at 64.625 kb on + strand, within PS417_00330at 64.625 kb on + strand, within PS417_00330at 64.716 kb on - strand, within PS417_00330at 64.853 kb on + strand, within PS417_00330at 64.853 kb on + strand, within PS417_00330at 65.010 kb on + strandat 65.012 kb on + strandat 65.013 kb on - strandat 65.013 kb on - strandat 65.013 kb on - strandat 65.061 kb on + strand, within PS417_00335at 65.062 kb on - strand, within PS417_00335at 65.172 kb on + strand, within PS417_00335at 65.417 kb on - strand, within PS417_00335at 65.603 kb on + strand, within PS417_00335at 65.603 kb on + strand, within PS417_00335at 65.603 kb on + strand, within PS417_00335at 65.603 kb on + strand, within PS417_00335at 65.604 kb on - strand, within PS417_00335at 65.604 kb on - strand, within PS417_00335at 65.625 kb on + strand, within PS417_00335at 65.625 kb on + strand, within PS417_00335at 65.626 kb on - strand, within PS417_00335at 65.626 kb on - strand, within PS417_00335at 65.626 kb on - strand, within PS417_00335at 65.740 kb on + strand, within PS417_00335at 65.741 kb on - strand, within PS417_00335at 65.741 kb on - strand, within PS417_00335at 65.745 kb on - strand, within PS417_00335at 65.814 kb on + strand, within PS417_00335at 65.815 kb on - strand, within PS417_00335at 65.895 kb on + strand, within PS417_00335at 65.896 kb on - strand, within PS417_00335at 65.896 kb on - strand, within PS417_00335at 65.963 kb on + strandat 65.972 kb on - strandat 65.991 kb on - strandat 66.053 kb on + strandat 66.097 kb on + strand, within PS417_00340at 66.098 kb on - strand, within PS417_00340at 66.157 kb on - strand, within PS417_00340at 66.407 kb on + strand, within PS417_00340at 66.408 kb on - strand, within PS417_00340at 66.443 kb on - strand, within PS417_00340at 66.443 kb on - strand, within PS417_00340at 66.647 kb on + strand, within PS417_00340at 66.648 kb on - strand, within PS417_00340at 66.707 kb on + strand, within PS417_00340at 66.708 kb on - strand, within PS417_00340at 66.708 kb on - strand, within PS417_00340at 66.792 kb on - strand, within PS417_00340at 66.833 kb on + strandat 66.833 kb on + strandat 66.838 kb on + strandat 66.839 kb on - strandat 66.839 kb on - strandat 66.845 kb on + strandat 66.888 kb on - strandat 66.900 kb on + strandat 66.900 kb on + strandat 66.900 kb on + strandat 66.900 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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64,051 + PS417_00325 0.57 -0.5
64,052 - PS417_00325 0.57 +0.3
64,052 - PS417_00325 0.57 +0.3
64,174 + PS417_00325 0.73 +0.6
64,303 + -1.8
64,303 + -2.3
64,303 + +0.3
64,303 + +0.3
64,310 - +0.2
64,463 + PS417_00330 0.21 +0.8
64,463 + +1.3
64,463 + PS417_00330 0.21 -1.3
64,464 - PS417_00330 0.21 -1.8
64,499 + PS417_00330 0.27 -0.7
64,499 + PS417_00330 0.27 +0.2
64,542 + PS417_00330 0.34 -0.7
64,543 - PS417_00330 0.34 -0.1
64,543 - PS417_00330 0.34 -2.3
64,625 + PS417_00330 0.48 -0.3
64,625 + PS417_00330 0.48 +0.0
64,716 - PS417_00330 0.64 -1.6
64,853 + PS417_00330 0.87 +2.3
64,853 + PS417_00330 0.87 -0.8
65,010 + -1.4
65,012 + -1.8
65,013 - -1.1
65,013 - +1.3
65,013 - +0.7
65,061 + PS417_00335 0.11 -1.1
65,062 - PS417_00335 0.11 +0.0
65,172 + PS417_00335 0.22 -2.5
65,417 - PS417_00335 0.44 -2.9
65,603 + PS417_00335 0.62 +1.1
65,603 + PS417_00335 0.62 +1.0
65,603 + PS417_00335 0.62 +0.2
65,603 + PS417_00335 0.62 -1.8
65,604 - PS417_00335 0.62 -0.5
65,604 - PS417_00335 0.62 -1.8
65,625 + PS417_00335 0.64 +0.0
65,625 + PS417_00335 0.64 -1.2
65,626 - PS417_00335 0.64 -2.0
65,626 - PS417_00335 0.64 -1.8
65,626 - PS417_00335 0.64 +0.4
65,740 + PS417_00335 0.74 -1.5
65,741 - PS417_00335 0.74 -4.0
65,741 - PS417_00335 0.74 -1.6
65,745 - PS417_00335 0.75 +0.4
65,814 + PS417_00335 0.81 -3.1
65,815 - PS417_00335 0.81 -0.7
65,895 + PS417_00335 0.89 -0.8
65,896 - PS417_00335 0.89 +0.3
65,896 - PS417_00335 0.89 -0.3
65,963 + -0.4
65,972 - +2.3
65,991 - +0.3
66,053 + -1.0
66,097 + PS417_00340 0.10 -1.8
66,098 - PS417_00340 0.10 +1.5
66,157 - PS417_00340 0.17 +2.1
66,407 + PS417_00340 0.45 -0.5
66,408 - PS417_00340 0.45 -0.7
66,443 - PS417_00340 0.49 -2.8
66,443 - PS417_00340 0.49 +0.7
66,647 + PS417_00340 0.71 -0.3
66,648 - PS417_00340 0.71 +0.6
66,707 + PS417_00340 0.78 -1.7
66,708 - PS417_00340 0.78 -0.1
66,708 - PS417_00340 0.78 -0.0
66,792 - PS417_00340 0.87 -3.3
66,833 + +2.3
66,833 + +0.7
66,838 + +1.7
66,839 - +0.6
66,839 - -0.4
66,845 + -1.2
66,888 - +0.9
66,900 + +0.3
66,900 + +0.4
66,900 + -0.5
66,900 + +0.1

Or see this region's nucleotide sequence