Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_28125 and PS417_28130 are separated by 182 nucleotides PS417_28130 and PS417_28135 are separated by 392 nucleotides
PS417_28125: PS417_28125 - LysR family transcriptional regulator, at 6,068,742 to 6,069,650
_28125
PS417_28130: PS417_28130 - aspartate ammonia-lyase, at 6,069,833 to 6,071,257
_28130
PS417_28135: PS417_28135 - sodium:alanine symporter, at 6,071,650 to 6,073,095
_28135
Position (kb)
6069
6070
6071
6072 Strain fitness (log2 ratio)
-1
0
1
2 at 6070.226 kb on + strand, within PS417_28130 at 6070.671 kb on + strand, within PS417_28130 at 6071.255 kb on + strand at 6071.469 kb on + strand at 6071.470 kb on - strand at 6071.470 kb on - strand at 6071.470 kb on - strand at 6071.470 kb on - strand at 6071.470 kb on - strand at 6071.472 kb on - strand at 6071.472 kb on - strand at 6071.539 kb on + strand at 6071.688 kb on - strand at 6071.781 kb on + strand at 6071.986 kb on + strand, within PS417_28135 at 6072.013 kb on + strand, within PS417_28135 at 6072.013 kb on + strand, within PS417_28135 at 6072.031 kb on + strand, within PS417_28135 at 6072.034 kb on + strand, within PS417_28135 at 6072.034 kb on + strand, within PS417_28135 at 6072.034 kb on + strand, within PS417_28135 at 6072.034 kb on + strand, within PS417_28135 at 6072.035 kb on - strand, within PS417_28135 at 6072.035 kb on - strand, within PS417_28135 at 6072.178 kb on + strand, within PS417_28135 at 6072.179 kb on - strand, within PS417_28135 at 6072.179 kb on - strand, within PS417_28135
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 6,070,226 + PS417_28130 0.28 +0.3 6,070,671 + PS417_28130 0.59 -0.3 6,071,255 + +0.2 6,071,469 + -0.4 6,071,470 - -0.4 6,071,470 - +0.3 6,071,470 - -1.6 6,071,470 - +0.4 6,071,470 - +2.4 6,071,472 - +1.6 6,071,472 - -0.3 6,071,539 + +0.7 6,071,688 - +1.1 6,071,781 + +0.8 6,071,986 + PS417_28135 0.23 +0.2 6,072,013 + PS417_28135 0.25 +0.3 6,072,013 + PS417_28135 0.25 +1.6 6,072,031 + PS417_28135 0.26 +0.6 6,072,034 + PS417_28135 0.27 -1.0 6,072,034 + PS417_28135 0.27 -1.0 6,072,034 + PS417_28135 0.27 -0.7 6,072,034 + PS417_28135 0.27 +2.3 6,072,035 - PS417_28135 0.27 +0.7 6,072,035 - PS417_28135 0.27 +2.3 6,072,178 + PS417_28135 0.37 +2.3 6,072,179 - PS417_28135 0.37 -1.3 6,072,179 - PS417_28135 0.37 -1.6
Or see this region's nucleotide sequence