Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27925 and PS417_27930 are separated by 6 nucleotides PS417_27930 and PS417_27935 are separated by 18 nucleotides PS417_27935 and PS417_27940 are separated by 57 nucleotides
PS417_27925: PS417_27925 - hypothetical protein, at 6,023,501 to 6,024,790
_27925
PS417_27930: PS417_27930 - type VI secretion protein, at 6,024,797 to 6,026,131
_27930
PS417_27935: PS417_27935 - type VI secretion protein, at 6,026,150 to 6,026,659
_27935
PS417_27940: PS417_27940 - type VI secretion protein, at 6,026,717 to 6,028,051
_27940
Position (kb)
6024
6025
6026
6027 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 6023.799 kb on + strand, within PS417_27925 at 6023.906 kb on - strand, within PS417_27925 at 6024.295 kb on - strand, within PS417_27925 at 6024.295 kb on - strand, within PS417_27925 at 6024.313 kb on - strand, within PS417_27925 at 6024.919 kb on - strand at 6024.919 kb on - strand at 6025.152 kb on + strand, within PS417_27930 at 6025.575 kb on + strand, within PS417_27930 at 6025.575 kb on + strand, within PS417_27930 at 6025.576 kb on - strand, within PS417_27930 at 6025.576 kb on - strand, within PS417_27930 at 6025.590 kb on - strand, within PS417_27930 at 6025.761 kb on + strand, within PS417_27930 at 6025.836 kb on + strand, within PS417_27930 at 6026.229 kb on + strand, within PS417_27935 at 6026.678 kb on + strand at 6026.682 kb on + strand at 6026.682 kb on + strand at 6026.682 kb on + strand at 6026.682 kb on + strand at 6026.682 kb on + strand at 6026.682 kb on + strand at 6026.682 kb on + strand at 6026.682 kb on + strand at 6026.682 kb on + strand at 6026.682 kb on + strand at 6026.683 kb on - strand at 6026.683 kb on - strand at 6026.683 kb on - strand at 6026.683 kb on - strand at 6026.683 kb on - strand at 6026.683 kb on - strand at 6026.809 kb on + strand at 6026.817 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 6,023,799 + PS417_27925 0.23 -2.8 6,023,906 - PS417_27925 0.31 +0.2 6,024,295 - PS417_27925 0.62 +0.2 6,024,295 - PS417_27925 0.62 -1.5 6,024,313 - PS417_27925 0.63 +0.1 6,024,919 - +0.1 6,024,919 - -0.6 6,025,152 + PS417_27930 0.27 -1.6 6,025,575 + PS417_27930 0.58 -0.1 6,025,575 + PS417_27930 0.58 +0.5 6,025,576 - PS417_27930 0.58 -0.8 6,025,576 - PS417_27930 0.58 -0.7 6,025,590 - PS417_27930 0.59 +0.7 6,025,761 + PS417_27930 0.72 -0.4 6,025,836 + PS417_27930 0.78 +0.4 6,026,229 + PS417_27935 0.15 +0.4 6,026,678 + -0.0 6,026,682 + -1.4 6,026,682 + -0.9 6,026,682 + +1.5 6,026,682 + -1.0 6,026,682 + -2.0 6,026,682 + +0.5 6,026,682 + +0.2 6,026,682 + +3.3 6,026,682 + +0.8 6,026,682 + +0.3 6,026,683 - +0.7 6,026,683 - +0.7 6,026,683 - +0.8 6,026,683 - -1.8 6,026,683 - -0.3 6,026,683 - -2.4 6,026,809 + +1.4 6,026,817 + -2.5
Or see this region's nucleotide sequence