Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27205 and PS417_27210 are separated by 104 nucleotides PS417_27210 and PS417_27215 are separated by 127 nucleotides PS417_27215 and PS417_27220 are separated by 84 nucleotides
PS417_27205: PS417_27205 - adenylate cyclase, at 5,873,798 to 5,875,165
_27205
PS417_27210: PS417_27210 - AsnC family transcriptional regulator, at 5,875,270 to 5,875,740
_27210
PS417_27215: PS417_27215 - hypothetical protein, at 5,875,868 to 5,876,206
_27215
PS417_27220: PS417_27220 - type II secretion system protein E, at 5,876,291 to 5,877,970
_27220
Position (kb) 5875
5876
5877 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5875.037 kb on + strand at 5875.037 kb on + strand at 5875.127 kb on + strand at 5875.128 kb on - strand at 5875.219 kb on + strand at 5875.219 kb on + strand at 5875.220 kb on - strand at 5875.382 kb on + strand, within PS417_27210 at 5875.382 kb on + strand, within PS417_27210 at 5875.383 kb on - strand, within PS417_27210 at 5875.383 kb on - strand, within PS417_27210 at 5875.442 kb on + strand, within PS417_27210 at 5875.442 kb on + strand, within PS417_27210 at 5875.442 kb on + strand at 5875.442 kb on + strand, within PS417_27210 at 5875.443 kb on - strand, within PS417_27210 at 5875.443 kb on - strand, within PS417_27210 at 5875.742 kb on + strand at 5875.808 kb on - strand at 5875.889 kb on + strand at 5875.998 kb on - strand, within PS417_27215 at 5876.152 kb on + strand, within PS417_27215 at 5876.153 kb on - strand, within PS417_27215 at 5876.153 kb on - strand, within PS417_27215 at 5876.217 kb on + strand at 5876.217 kb on + strand at 5876.218 kb on - strand at 5876.218 kb on - strand at 5876.251 kb on - strand at 5876.262 kb on + strand at 5876.489 kb on + strand, within PS417_27220 at 5876.489 kb on + strand, within PS417_27220 at 5876.490 kb on - strand, within PS417_27220 at 5876.705 kb on - strand, within PS417_27220 at 5876.941 kb on + strand, within PS417_27220 at 5876.967 kb on - strand, within PS417_27220 at 5876.997 kb on + strand, within PS417_27220 at 5877.103 kb on - strand, within PS417_27220
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 5,875,037 + +0.9 5,875,037 + +2.7 5,875,127 + +1.4 5,875,128 - +0.0 5,875,219 + +0.7 5,875,219 + +0.9 5,875,220 - +2.3 5,875,382 + PS417_27210 0.24 -2.9 5,875,382 + PS417_27210 0.24 +0.7 5,875,383 - PS417_27210 0.24 -0.6 5,875,383 - PS417_27210 0.24 -1.2 5,875,442 + PS417_27210 0.37 -1.4 5,875,442 + PS417_27210 0.37 -1.0 5,875,442 + +0.7 5,875,442 + PS417_27210 0.37 -0.5 5,875,443 - PS417_27210 0.37 +1.5 5,875,443 - PS417_27210 0.37 +0.0 5,875,742 + +0.3 5,875,808 - -2.1 5,875,889 + +0.3 5,875,998 - PS417_27215 0.38 -1.2 5,876,152 + PS417_27215 0.84 -0.9 5,876,153 - PS417_27215 0.84 +1.3 5,876,153 - PS417_27215 0.84 -1.7 5,876,217 + -1.0 5,876,217 + +0.4 5,876,218 - -0.1 5,876,218 - +2.3 5,876,251 - +0.6 5,876,262 + -0.8 5,876,489 + PS417_27220 0.12 +0.7 5,876,489 + PS417_27220 0.12 -0.4 5,876,490 - PS417_27220 0.12 -0.4 5,876,705 - PS417_27220 0.25 +2.9 5,876,941 + PS417_27220 0.39 +0.1 5,876,967 - PS417_27220 0.40 +0.4 5,876,997 + PS417_27220 0.42 +2.3 5,877,103 - PS417_27220 0.48 +0.3
Or see this region's nucleotide sequence