Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24090 and PS417_24095 are separated by 168 nucleotides PS417_24095 and PS417_24100 are separated by 36 nucleotides PS417_24100 and PS417_24105 are separated by 252 nucleotides
PS417_24090: PS417_24090 - ribosome association toxin RatA, at 5,215,911 to 5,216,345
_24090
PS417_24095: PS417_24095 - SsrA-binding protein, at 5,216,514 to 5,216,996
_24095
PS417_24100: PS417_24100 - transcriptional regulator PdhR, at 5,217,033 to 5,217,800
_24100
PS417_24105: PS417_24105 - D-lactate transporter (lctP family) (from data) , at 5,218,053 to 5,219,747
_24105
Position (kb)
5217
5218 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5216.499 kb on + strand at 5217.035 kb on - strand at 5217.035 kb on - strand at 5217.109 kb on + strand at 5217.110 kb on - strand, within PS417_24100 at 5217.172 kb on + strand, within PS417_24100 at 5217.172 kb on + strand, within PS417_24100 at 5217.173 kb on - strand, within PS417_24100 at 5217.226 kb on + strand, within PS417_24100 at 5217.226 kb on + strand, within PS417_24100 at 5217.227 kb on - strand, within PS417_24100 at 5217.227 kb on - strand, within PS417_24100 at 5217.227 kb on - strand, within PS417_24100 at 5217.227 kb on - strand, within PS417_24100 at 5217.389 kb on - strand, within PS417_24100 at 5217.461 kb on - strand, within PS417_24100 at 5217.463 kb on + strand, within PS417_24100 at 5217.584 kb on - strand, within PS417_24100 at 5217.584 kb on - strand, within PS417_24100 at 5217.584 kb on - strand, within PS417_24100 at 5217.587 kb on + strand, within PS417_24100 at 5217.841 kb on - strand at 5217.871 kb on + strand at 5217.872 kb on - strand at 5217.872 kb on - strand at 5217.920 kb on + strand at 5217.921 kb on - strand at 5217.921 kb on - strand at 5217.972 kb on - strand at 5218.074 kb on + strand at 5218.075 kb on - strand at 5218.119 kb on - strand at 5218.130 kb on - strand at 5218.130 kb on - strand at 5218.130 kb on - strand at 5218.187 kb on + strand at 5218.187 kb on + strand at 5218.323 kb on + strand, within PS417_24105 at 5218.408 kb on + strand, within PS417_24105 at 5218.409 kb on - strand, within PS417_24105 at 5218.516 kb on - strand, within PS417_24105 at 5218.767 kb on + strand, within PS417_24105 at 5218.767 kb on + strand, within PS417_24105 at 5218.768 kb on - strand, within PS417_24105 at 5218.768 kb on - strand, within PS417_24105
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 5,216,499 + -2.4 5,217,035 - -0.2 5,217,035 - -1.7 5,217,109 + -2.0 5,217,110 - PS417_24100 0.10 +0.3 5,217,172 + PS417_24100 0.18 -3.2 5,217,172 + PS417_24100 0.18 -1.9 5,217,173 - PS417_24100 0.18 -0.9 5,217,226 + PS417_24100 0.25 -1.0 5,217,226 + PS417_24100 0.25 -1.4 5,217,227 - PS417_24100 0.25 -0.5 5,217,227 - PS417_24100 0.25 -2.6 5,217,227 - PS417_24100 0.25 +0.7 5,217,227 - PS417_24100 0.25 -3.3 5,217,389 - PS417_24100 0.46 -1.9 5,217,461 - PS417_24100 0.56 -0.8 5,217,463 + PS417_24100 0.56 -1.2 5,217,584 - PS417_24100 0.72 -1.6 5,217,584 - PS417_24100 0.72 -2.1 5,217,584 - PS417_24100 0.72 -1.9 5,217,587 + PS417_24100 0.72 -3.1 5,217,841 - -0.1 5,217,871 + -3.5 5,217,872 - +0.3 5,217,872 - -2.9 5,217,920 + +0.7 5,217,921 - -1.2 5,217,921 - -1.5 5,217,972 - +0.2 5,218,074 + +0.7 5,218,075 - +0.4 5,218,119 - -1.0 5,218,130 - +2.3 5,218,130 - +0.3 5,218,130 - -2.0 5,218,187 + -1.4 5,218,187 + +0.7 5,218,323 + PS417_24105 0.16 -0.9 5,218,408 + PS417_24105 0.21 -1.9 5,218,409 - PS417_24105 0.21 -0.6 5,218,516 - PS417_24105 0.27 +0.6 5,218,767 + PS417_24105 0.42 -0.7 5,218,767 + PS417_24105 0.42 -1.0 5,218,768 - PS417_24105 0.42 +2.0 5,218,768 - PS417_24105 0.42 -0.1
Or see this region's nucleotide sequence