Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21335 and PS417_21340 are separated by 32 nucleotides PS417_21340 and PS417_21345 are separated by 269 nucleotides PS417_21345 and PS417_21350 are separated by 190 nucleotides
PS417_21335: PS417_21335 - sugar ABC transporter substrate-binding protein, at 4,637,414 to 4,638,394
_21335
PS417_21340: PS417_21340 - short-chain dehydrogenase, at 4,638,427 to 4,639,248
_21340
PS417_21345: PS417_21345 - GNAT family acetyltransferase, at 4,639,518 to 4,639,997
_21345
PS417_21350: PS417_21350 - hypothetical protein, at 4,640,188 to 4,640,520
_21350
Position (kb) 4638
4639
4640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4637.586 kb on + strand at 4637.925 kb on + strand at 4637.925 kb on + strand, within PS417_21335 at 4637.925 kb on + strand, within PS417_21335 at 4637.925 kb on + strand, within PS417_21335 at 4637.926 kb on - strand, within PS417_21335 at 4637.926 kb on - strand, within PS417_21335 at 4637.926 kb on - strand, within PS417_21335 at 4637.926 kb on - strand, within PS417_21335 at 4638.018 kb on + strand, within PS417_21335 at 4638.377 kb on + strand at 4638.428 kb on + strand at 4638.437 kb on + strand at 4638.642 kb on - strand, within PS417_21340 at 4638.943 kb on + strand, within PS417_21340 at 4638.944 kb on - strand, within PS417_21340 at 4638.944 kb on - strand, within PS417_21340 at 4638.944 kb on - strand, within PS417_21340 at 4638.944 kb on - strand, within PS417_21340 at 4638.944 kb on - strand, within PS417_21340 at 4639.028 kb on + strand, within PS417_21340 at 4639.029 kb on - strand, within PS417_21340 at 4639.202 kb on + strand at 4639.202 kb on + strand at 4639.203 kb on - strand at 4639.295 kb on + strand at 4639.298 kb on - strand at 4639.298 kb on - strand at 4639.324 kb on - strand at 4639.327 kb on + strand at 4639.345 kb on - strand at 4639.366 kb on - strand at 4639.737 kb on - strand, within PS417_21345 at 4639.738 kb on + strand, within PS417_21345 at 4639.738 kb on + strand, within PS417_21345 at 4639.738 kb on + strand, within PS417_21345 at 4639.784 kb on - strand, within PS417_21345 at 4639.922 kb on - strand, within PS417_21345 at 4640.028 kb on + strand at 4640.028 kb on + strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.029 kb on - strand at 4640.031 kb on + strand at 4640.031 kb on + strand at 4640.031 kb on + strand at 4640.031 kb on + strand at 4640.151 kb on + strand at 4640.154 kb on + strand at 4640.154 kb on + strand at 4640.155 kb on - strand at 4640.155 kb on - strand at 4640.158 kb on + strand at 4640.159 kb on - strand at 4640.167 kb on + strand at 4640.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 4,637,586 + -0.0 4,637,925 + +2.3 4,637,925 + PS417_21335 0.52 -2.5 4,637,925 + PS417_21335 0.52 -1.9 4,637,925 + PS417_21335 0.52 +0.4 4,637,926 - PS417_21335 0.52 -0.5 4,637,926 - PS417_21335 0.52 -1.0 4,637,926 - PS417_21335 0.52 +0.4 4,637,926 - PS417_21335 0.52 +0.3 4,638,018 + PS417_21335 0.62 +1.2 4,638,377 + -1.8 4,638,428 + +0.6 4,638,437 + -0.8 4,638,642 - PS417_21340 0.26 -0.9 4,638,943 + PS417_21340 0.63 +0.3 4,638,944 - PS417_21340 0.63 -0.0 4,638,944 - PS417_21340 0.63 -1.2 4,638,944 - PS417_21340 0.63 -0.9 4,638,944 - PS417_21340 0.63 -0.7 4,638,944 - PS417_21340 0.63 -0.4 4,639,028 + PS417_21340 0.73 -1.3 4,639,029 - PS417_21340 0.73 -0.2 4,639,202 + -0.3 4,639,202 + -2.5 4,639,203 - +0.3 4,639,295 + +1.8 4,639,298 - -1.0 4,639,298 - -3.2 4,639,324 - +0.4 4,639,327 + -0.5 4,639,345 - +0.9 4,639,366 - -0.1 4,639,737 - PS417_21345 0.46 -2.8 4,639,738 + PS417_21345 0.46 -0.5 4,639,738 + PS417_21345 0.46 -0.9 4,639,738 + PS417_21345 0.46 +0.6 4,639,784 - PS417_21345 0.55 +2.1 4,639,922 - PS417_21345 0.84 +1.2 4,640,028 + -0.4 4,640,028 + -0.3 4,640,029 - +0.3 4,640,029 - -0.1 4,640,029 - +0.4 4,640,029 - -3.0 4,640,029 - -0.7 4,640,029 - -0.5 4,640,029 - -0.4 4,640,029 - +0.6 4,640,029 - -0.3 4,640,029 - +0.1 4,640,031 + +3.3 4,640,031 + +1.6 4,640,031 + -0.6 4,640,031 + -0.3 4,640,151 + -0.1 4,640,154 + -0.4 4,640,154 + +0.6 4,640,155 - +0.0 4,640,155 - -2.2 4,640,158 + -0.7 4,640,159 - -1.0 4,640,167 + +2.7 4,640,174 - -0.0
Or see this region's nucleotide sequence