Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21160 and PS417_21165 are separated by 93 nucleotides PS417_21165 and PS417_21170 are separated by 54 nucleotides PS417_21170 and PS417_21175 are separated by 119 nucleotides
PS417_21160: PS417_21160 - membrane protein, at 4,603,279 to 4,604,247
_21160
PS417_21165: PS417_21165 - LysR family transcriptional regulator, at 4,604,341 to 4,605,225
_21165
PS417_21170: PS417_21170 - membrane protein, at 4,605,280 to 4,605,858
_21170
PS417_21175: PS417_21175 - hypothetical protein, at 4,605,978 to 4,606,610
_21175
Position (kb) 4604
4605
4606 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4603.412 kb on + strand, within PS417_21160 at 4603.642 kb on + strand, within PS417_21160 at 4603.642 kb on + strand, within PS417_21160 at 4603.656 kb on - strand, within PS417_21160 at 4603.917 kb on - strand, within PS417_21160 at 4603.922 kb on + strand, within PS417_21160 at 4603.939 kb on + strand, within PS417_21160 at 4603.940 kb on - strand, within PS417_21160 at 4603.944 kb on + strand, within PS417_21160 at 4604.113 kb on - strand, within PS417_21160 at 4604.231 kb on - strand at 4604.299 kb on - strand at 4604.299 kb on - strand at 4604.331 kb on - strand at 4604.434 kb on - strand, within PS417_21165 at 4604.660 kb on + strand, within PS417_21165 at 4604.860 kb on + strand, within PS417_21165 at 4604.868 kb on - strand, within PS417_21165 at 4604.868 kb on - strand, within PS417_21165 at 4604.868 kb on - strand, within PS417_21165 at 4605.211 kb on + strand at 4605.212 kb on - strand at 4605.215 kb on + strand at 4605.216 kb on - strand at 4605.424 kb on + strand, within PS417_21170 at 4605.511 kb on + strand, within PS417_21170 at 4605.512 kb on - strand, within PS417_21170 at 4605.512 kb on - strand, within PS417_21170 at 4605.514 kb on + strand, within PS417_21170 at 4605.586 kb on + strand, within PS417_21170 at 4605.587 kb on - strand, within PS417_21170 at 4605.587 kb on - strand, within PS417_21170 at 4605.607 kb on + strand, within PS417_21170 at 4605.762 kb on + strand, within PS417_21170 at 4605.763 kb on - strand, within PS417_21170 at 4605.909 kb on + strand at 4605.909 kb on + strand at 4605.910 kb on - strand at 4605.913 kb on + strand at 4605.913 kb on + strand at 4605.913 kb on + strand at 4605.913 kb on + strand at 4605.913 kb on + strand at 4605.913 kb on + strand at 4605.913 kb on + strand at 4605.914 kb on - strand at 4605.914 kb on - strand at 4605.914 kb on - strand at 4605.914 kb on - strand at 4605.936 kb on + strand at 4605.937 kb on - strand at 4605.973 kb on + strand at 4605.973 kb on + strand at 4606.223 kb on - strand, within PS417_21175
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 4,603,412 + PS417_21160 0.14 +2.8 4,603,642 + PS417_21160 0.37 +0.9 4,603,642 + PS417_21160 0.37 +2.3 4,603,656 - PS417_21160 0.39 -2.9 4,603,917 - PS417_21160 0.66 +0.4 4,603,922 + PS417_21160 0.66 +1.3 4,603,939 + PS417_21160 0.68 +0.5 4,603,940 - PS417_21160 0.68 -0.3 4,603,944 + PS417_21160 0.69 -2.1 4,604,113 - PS417_21160 0.86 -1.4 4,604,231 - -0.5 4,604,299 - -0.1 4,604,299 - -0.0 4,604,331 - +0.3 4,604,434 - PS417_21165 0.11 -1.6 4,604,660 + PS417_21165 0.36 -2.9 4,604,860 + PS417_21165 0.59 -0.0 4,604,868 - PS417_21165 0.60 -0.2 4,604,868 - PS417_21165 0.60 -2.1 4,604,868 - PS417_21165 0.60 -1.0 4,605,211 + -1.7 4,605,212 - -2.2 4,605,215 + +0.3 4,605,216 - -0.0 4,605,424 + PS417_21170 0.25 -0.6 4,605,511 + PS417_21170 0.40 -1.4 4,605,512 - PS417_21170 0.40 +0.1 4,605,512 - PS417_21170 0.40 -1.1 4,605,514 + PS417_21170 0.40 -1.9 4,605,586 + PS417_21170 0.53 +1.0 4,605,587 - PS417_21170 0.53 +0.3 4,605,587 - PS417_21170 0.53 -2.0 4,605,607 + PS417_21170 0.56 +1.3 4,605,762 + PS417_21170 0.83 +0.7 4,605,763 - PS417_21170 0.83 -1.6 4,605,909 + -0.8 4,605,909 + +0.3 4,605,910 - +0.7 4,605,913 + +0.8 4,605,913 + +0.0 4,605,913 + +0.0 4,605,913 + +1.5 4,605,913 + -1.1 4,605,913 + -0.0 4,605,913 + +0.1 4,605,914 - +0.6 4,605,914 - -4.6 4,605,914 - -0.5 4,605,914 - -0.3 4,605,936 + +1.6 4,605,937 - -1.7 4,605,973 + -0.6 4,605,973 + +2.3 4,606,223 - PS417_21175 0.39 +2.3
Or see this region's nucleotide sequence