Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01770 and PS417_01775 are separated by 153 nucleotides PS417_01775 and PS417_01780 are separated by 103 nucleotides
PS417_01770: PS417_01770 - glycine/betaine ABC transporter substrate-binding protein, at 393,752 to 394,687
_01770
PS417_01775: PS417_01775 - lipase, at 394,841 to 395,770
_01775
PS417_01780: PS417_01780 - proline iminopeptidase, at 395,874 to 396,845
_01780
Position (kb) 394
395
396 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 393.982 kb on + strand, within PS417_01770 at 394.109 kb on + strand, within PS417_01770 at 394.181 kb on + strand, within PS417_01770 at 394.181 kb on + strand, within PS417_01770 at 394.407 kb on + strand, within PS417_01770 at 394.407 kb on + strand, within PS417_01770 at 394.408 kb on - strand, within PS417_01770 at 394.666 kb on - strand at 394.754 kb on + strand at 394.755 kb on - strand at 394.844 kb on + strand at 394.935 kb on - strand, within PS417_01775 at 394.935 kb on - strand, within PS417_01775 at 395.025 kb on - strand, within PS417_01775 at 395.072 kb on + strand, within PS417_01775 at 395.072 kb on + strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.075 kb on - strand, within PS417_01775 at 395.076 kb on + strand, within PS417_01775 at 395.076 kb on + strand, within PS417_01775 at 395.077 kb on - strand, within PS417_01775 at 395.376 kb on + strand, within PS417_01775 at 395.376 kb on + strand, within PS417_01775 at 395.377 kb on - strand, within PS417_01775 at 395.471 kb on + strand, within PS417_01775 at 395.472 kb on - strand, within PS417_01775 at 395.472 kb on - strand, within PS417_01775 at 395.483 kb on + strand at 395.609 kb on + strand, within PS417_01775 at 395.726 kb on + strand at 395.739 kb on - strand at 395.778 kb on - strand at 395.806 kb on + strand at 395.807 kb on - strand at 395.807 kb on - strand at 395.807 kb on - strand at 395.807 kb on - strand at 395.808 kb on + strand at 395.947 kb on - strand at 395.987 kb on - strand, within PS417_01780 at 396.357 kb on + strand, within PS417_01780 at 396.358 kb on - strand, within PS417_01780 at 396.358 kb on - strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.668 kb on + strand, within PS417_01780 at 396.669 kb on - strand, within PS417_01780
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 393,982 + PS417_01770 0.25 +0.2 394,109 + PS417_01770 0.38 -1.0 394,181 + PS417_01770 0.46 -0.6 394,181 + PS417_01770 0.46 -0.3 394,407 + PS417_01770 0.70 +0.5 394,407 + PS417_01770 0.70 -1.0 394,408 - PS417_01770 0.70 -2.1 394,666 - +0.1 394,754 + +1.3 394,755 - -1.0 394,844 + -0.4 394,935 - PS417_01775 0.10 -2.4 394,935 - PS417_01775 0.10 +0.2 395,025 - PS417_01775 0.20 -1.5 395,072 + PS417_01775 0.25 +0.0 395,072 + PS417_01775 0.25 -0.7 395,073 - PS417_01775 0.25 -0.5 395,073 - PS417_01775 0.25 -1.5 395,073 - PS417_01775 0.25 +1.6 395,073 - PS417_01775 0.25 +1.3 395,073 - PS417_01775 0.25 +1.1 395,073 - PS417_01775 0.25 -0.7 395,075 - PS417_01775 0.25 -1.8 395,076 + PS417_01775 0.25 -0.5 395,076 + PS417_01775 0.25 +0.9 395,077 - PS417_01775 0.25 -3.8 395,376 + PS417_01775 0.58 -3.4 395,376 + PS417_01775 0.58 -1.7 395,377 - PS417_01775 0.58 -2.4 395,471 + PS417_01775 0.68 -0.2 395,472 - PS417_01775 0.68 -0.2 395,472 - PS417_01775 0.68 +0.9 395,483 + +2.3 395,609 + PS417_01775 0.83 -0.9 395,726 + -0.2 395,739 - +0.2 395,778 - -0.2 395,806 + +1.8 395,807 - +0.3 395,807 - +1.0 395,807 - -1.0 395,807 - -0.0 395,808 + -1.8 395,947 - -0.1 395,987 - PS417_01780 0.12 -1.4 396,357 + PS417_01780 0.50 -0.5 396,358 - PS417_01780 0.50 -0.2 396,358 - PS417_01780 0.50 +0.1 396,570 + PS417_01780 0.72 +2.8 396,570 + PS417_01780 0.72 -0.2 396,570 + PS417_01780 0.72 -0.2 396,668 + PS417_01780 0.82 -1.7 396,669 - PS417_01780 0.82 -2.0
Or see this region's nucleotide sequence